PPR14_ARATH
ID PPR14_ARATH Reviewed; 558 AA.
AC Q9LND4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g06140, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E61; OrderedLocusNames=At1g06140; ORFNames=T21E18.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC024174; AAF80137.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27946.1; -; Genomic_DNA.
DR PIR; G86196; G86196.
DR RefSeq; NP_172104.1; NM_100495.2.
DR AlphaFoldDB; Q9LND4; -.
DR SMR; Q9LND4; -.
DR STRING; 3702.AT1G06140.1; -.
DR PaxDb; Q9LND4; -.
DR PRIDE; Q9LND4; -.
DR EnsemblPlants; AT1G06140.1; AT1G06140.1; AT1G06140.
DR GeneID; 837123; -.
DR Gramene; AT1G06140.1; AT1G06140.1; AT1G06140.
DR KEGG; ath:AT1G06140; -.
DR Araport; AT1G06140; -.
DR TAIR; locus:2198811; AT1G06140.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9LND4; -.
DR OMA; MGIKGYR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LND4; -.
DR PRO; PR:Q9LND4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LND4; baseline and differential.
DR Genevisible; Q9LND4; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..79
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 80..558
FT /note="Pentatricopeptide repeat-containing protein
FT At1g06140, mitochondrial"
FT /id="PRO_0000342755"
FT REPEAT 38..68
FT /note="PPR 1"
FT REPEAT 71..103
FT /note="PPR 2"
FT REPEAT 108..142
FT /note="PPR 3"
FT REPEAT 143..173
FT /note="PPR 4"
FT REPEAT 174..208
FT /note="PPR 5"
FT REPEAT 209..243
FT /note="PPR 6"
FT REPEAT 245..275
FT /note="PPR 7"
FT REPEAT 276..310
FT /note="PPR 8"
FT REPEAT 311..345
FT /note="PPR 9"
FT REPEAT 346..376
FT /note="PPR 10"
FT REPEAT 377..411
FT /note="PPR 11"
FT REPEAT 412..447
FT /note="PPR 12"
FT REPEAT 448..482
FT /note="PPR 13"
FT REGION 483..558
FT /note="Type E motif"
SQ SEQUENCE 558 AA; 62378 MW; 72C625DB6C9897F5 CRC64;
MLPVNRARAL LTILSQAKTL NHTQQVHAKV IIHGFEDEVV LGSSLTNAYI QSNRLDFATS
SFNRIPCWKR NRHSWNTILS GYSKSKTCCY SDVLLLYNRM RRHCDGVDSF NLVFAIKACV
GLGLLENGIL IHGLAMKNGL DKDDYVAPSL VEMYAQLGTM ESAQKVFDEI PVRNSVLWGV
LMKGYLKYSK DPEVFRLFCL MRDTGLALDA LTLICLVKAC GNVFAGKVGK CVHGVSIRRS
FIDQSDYLQA SIIDMYVKCR LLDNARKLFE TSVDRNVVMW TTLISGFAKC ERAVEAFDLF
RQMLRESILP NQCTLAAILV SCSSLGSLRH GKSVHGYMIR NGIEMDAVNF TSFIDMYARC
GNIQMARTVF DMMPERNVIS WSSMINAFGI NGLFEEALDC FHKMKSQNVV PNSVTFVSLL
SACSHSGNVK EGWKQFESMT RDYGVVPEEE HYACMVDLLG RAGEIGEAKS FIDNMPVKPM
ASAWGALLSA CRIHKEVDLA GEIAEKLLSM EPEKSSVYVL LSNIYADAGM WEMVNCVRRK
MGIKGYRKHV GQSATEVG
