PPR15_ARATH
ID PPR15_ARATH Reviewed; 577 AA.
AC Q56X05; F4IC01; Q9LND3;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g06143;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1444;
GN Name=EMB1444; Synonyms=PCMP-E62; OrderedLocusNames=At1g06143;
GN ORFNames=T21E18.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF80138.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g06143 and At1g06150.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC024174; AAF80138.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; ANM60157.1; -; Genomic_DNA.
DR EMBL; AK221874; BAD94184.1; -; mRNA.
DR PIR; H86196; H86196.
DR RefSeq; NP_001322461.1; NM_001331615.1.
DR AlphaFoldDB; Q56X05; -.
DR SMR; Q56X05; -.
DR PRIDE; Q56X05; -.
DR ProteomicsDB; 234864; -.
DR EnsemblPlants; AT1G06143.1; AT1G06143.1; AT1G06143.
DR GeneID; 28716441; -.
DR Gramene; AT1G06143.1; AT1G06143.1; AT1G06143.
DR KEGG; ath:AT1G06143; -.
DR Araport; AT1G06143; -.
DR TAIR; locus:2198776; AT1G06150.
DR HOGENOM; CLU_005978_0_0_1; -.
DR OMA; AVHGHIW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q56X05; -.
DR PRO; PR:Q56X05; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q56X05; baseline and differential.
DR Genevisible; Q56X05; AT.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..577
FT /note="Pentatricopeptide repeat-containing protein
FT At1g06143"
FT /id="PRO_0000342756"
FT REPEAT 59..89
FT /note="PPR 1"
FT REPEAT 90..124
FT /note="PPR 2"
FT REPEAT 125..155
FT /note="PPR 3"
FT REPEAT 158..192
FT /note="PPR 4"
FT REPEAT 193..219
FT /note="PPR 5"
FT REPEAT 220..250
FT /note="PPR 6"
FT REPEAT 251..285
FT /note="PPR 7"
FT REPEAT 286..320
FT /note="PPR 8"
FT REPEAT 321..351
FT /note="PPR 9"
FT REPEAT 352..386
FT /note="PPR 10"
FT REPEAT 387..417
FT /note="PPR 11"
FT REPEAT 423..453
FT /note="PPR 12"
FT REGION 458..534
FT /note="Type E motif"
FT REGION 535..565
FT /note="Type E(+) motif"
FT CONFLICT 75
FT /note="R -> C (in Ref. 3; BAD94184)"
FT /evidence="ECO:0000305"
FT CONFLICT 174
FT /note="R -> G (in Ref. 3; BAD94184)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 577 AA; 65069 MW; 24756A1164B161DC CRC64;
MNAFANVHSL RVPSHHLRDF SASLSLAPPN LKKIIKQCST PKLLESALAA MIKTSLNQDC
RLMNQFITAC TSFKRLDLAV STMTQMQEPN VFVYNALFKG FVTCSHPIRS LELYVRMLRD
SVSPSSYTYS SLVKASSFAS RFGESLQAHI WKFGFGFHVK IQTTLIDFYS ATGRIREARK
VFDEMPERDD IAWTTMVSAY RRVLDMDSAN SLANQMSEKN EATSNCLING YMGLGNLEQA
ESLFNQMPVK DIISWTTMIK GYSQNKRYRE AIAVFYKMME EGIIPDEVTM STVISACAHL
GVLEIGKEVH MYTLQNGFVL DVYIGSALVD MYSKCGSLER ALLVFFNLPK KNLFCWNSII
EGLAAHGFAQ EALKMFAKME MESVKPNAVT FVSVFTACTH AGLVDEGRRI YRSMIDDYSI
VSNVEHYGGM VHLFSKAGLI YEALELIGNM EFEPNAVIWG ALLDGCRIHK NLVIAEIAFN
KLMVLEPMNS GYYFLLVSMY AEQNRWRDVA EIRGRMRELG IEKICPGTSS IRIDKRDHLF
AAADKSHSAS DEVCLLLDEI YDQMGLAGYV QETENVY
