PPR16_ARATH
ID PPR16_ARATH Reviewed; 343 AA.
AC Q9LNC0;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g06270;
GN OrderedLocusNames=At1g06270; ORFNames=F9P14.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC025290; AAF80224.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27970.1; -; Genomic_DNA.
DR EMBL; AY065382; AAL38823.1; -; mRNA.
DR EMBL; AY096546; AAM20196.1; -; mRNA.
DR EMBL; AY084351; AAM60933.1; -; mRNA.
DR PIR; E86198; E86198.
DR RefSeq; NP_563765.1; NM_100509.5.
DR AlphaFoldDB; Q9LNC0; -.
DR SMR; Q9LNC0; -.
DR BioGRID; 22379; 2.
DR IntAct; Q9LNC0; 2.
DR STRING; 3702.AT1G06270.1; -.
DR PaxDb; Q9LNC0; -.
DR PRIDE; Q9LNC0; -.
DR EnsemblPlants; AT1G06270.1; AT1G06270.1; AT1G06270.
DR GeneID; 837138; -.
DR Gramene; AT1G06270.1; AT1G06270.1; AT1G06270.
DR KEGG; ath:AT1G06270; -.
DR Araport; AT1G06270; -.
DR TAIR; locus:2038525; AT1G06270.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_835215_0_0_1; -.
DR InParanoid; Q9LNC0; -.
DR OMA; GTCNYLI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LNC0; -.
DR PRO; PR:Q9LNC0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LNC0; baseline and differential.
DR Genevisible; Q9LNC0; AT.
DR GO; GO:0042170; C:plastid membrane; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 1.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 5.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..343
FT /note="Pentatricopeptide repeat-containing protein
FT At1g06270"
FT /id="PRO_0000342757"
FT REPEAT 98..133
FT /note="PPR 1"
FT REPEAT 134..169
FT /note="PPR 2"
FT REPEAT 170..204
FT /note="PPR 3"
FT REPEAT 205..240
FT /note="PPR 4"
FT REPEAT 241..275
FT /note="PPR 5"
FT REPEAT 276..310
FT /note="PPR 6"
SQ SEQUENCE 343 AA; 38934 MW; 7BD02BBE7C0347F0 CRC64;
MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP
YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI VYSSLLTYCL QSSDPLPLSF
AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS
LCAVDKLDEA IKVVEEMSAA GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP
RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS
