PPR17_ARATH
ID PPR17_ARATH Reviewed; 500 AA.
AC Q9SHK2;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g06580;
GN OrderedLocusNames=At1g06580; ORFNames=F12K11.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK229240; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007592; AAF24812.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28008.1; -; Genomic_DNA.
DR EMBL; AK229240; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_172145.1; NM_100537.4.
DR AlphaFoldDB; Q9SHK2; -.
DR SMR; Q9SHK2; -.
DR STRING; 3702.AT1G06580.1; -.
DR iPTMnet; Q9SHK2; -.
DR PaxDb; Q9SHK2; -.
DR PRIDE; Q9SHK2; -.
DR EnsemblPlants; AT1G06580.1; AT1G06580.1; AT1G06580.
DR GeneID; 837169; -.
DR Gramene; AT1G06580.1; AT1G06580.1; AT1G06580.
DR KEGG; ath:AT1G06580; -.
DR Araport; AT1G06580; -.
DR TAIR; locus:2009155; AT1G06580.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9SHK2; -.
DR OMA; FCDMAES; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SHK2; -.
DR PRO; PR:Q9SHK2; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SHK2; baseline and differential.
DR Genevisible; Q9SHK2; AT.
DR GO; GO:0042742; P:defense response to bacterium; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..500
FT /note="Pentatricopeptide repeat-containing protein
FT At1g06580"
FT /id="PRO_0000342758"
FT REPEAT 78..112
FT /note="PPR 1"
FT REPEAT 113..147
FT /note="PPR 2"
FT REPEAT 148..182
FT /note="PPR 3"
FT REPEAT 183..217
FT /note="PPR 4"
FT REPEAT 218..252
FT /note="PPR 5"
FT REPEAT 253..287
FT /note="PPR 6"
FT REPEAT 288..322
FT /note="PPR 7"
FT REPEAT 323..357
FT /note="PPR 8"
FT REPEAT 358..392
FT /note="PPR 9"
FT REPEAT 393..427
FT /note="PPR 10"
FT REPEAT 428..462
FT /note="PPR 11"
FT REPEAT 463..498
FT /note="PPR 12"
SQ SEQUENCE 500 AA; 56164 MW; 5B6DCE19B498745E CRC64;
MRRSIVIVIA LTAKGFLHRH LLEKGNLVTA LSLRICNSRA FSGRSDYRER LRSGLHSIKF
NDALTLFCDM AESHPLPSIV DFSRLLIAIA KLNKYEAVIS LFRHLEMLGI SHDLYSFTTL
IDCFCRCARL SLALSCLGKM MKLGFEPSIV TFGSLVNGFC HVNRFYEAMS LVDQIVGLGY
EPNVVIYNTI IDSLCEKGQV NTALDVLKHM KKMGIRPDVV TYNSLITRLF HSGTWGVSAR
ILSDMMRMGI SPDVITFSAL IDVYGKEGQL LEAKKQYNEM IQRSVNPNIV TYNSLINGLC
IHGLLDEAKK VLNVLVSKGF FPNAVTYNTL INGYCKAKRV DDGMKILCVM SRDGVDGDTF
TYNTLYQGYC QAGKFSAAEK VLGRMVSCGV HPDMYTFNIL LDGLCDHGKI GKALVRLEDL
QKSKTVVGII TYNIIIKGLC KADKVEDAWY LFCSLALKGV SPDVITYITM MIGLRRKRLW
REAHELYRKM QKEDGLMPIK
