PPR18_ARATH
ID PPR18_ARATH Reviewed; 987 AA.
AC Q9M9X9; F4IDR2; Q5S1W1;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g06710, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g06710; ORFNames=F4H5.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 42-987.
RC STRAIN=cv. Landsberg erecta;
RA Liu T., Shan D.;
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AEE28027.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC011001; AAF63148.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28027.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; ANM58760.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58761.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58762.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58763.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58766.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58767.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58768.1; -; Genomic_DNA.
DR EMBL; AY788907; AAV58825.1; -; Genomic_DNA.
DR PIR; G86201; G86201.
DR RefSeq; NP_001321172.1; NM_001331654.1.
DR RefSeq; NP_001321173.1; NM_001331649.1.
DR RefSeq; NP_001321174.1; NM_001331653.1.
DR RefSeq; NP_001321175.1; NM_001331645.1.
DR RefSeq; NP_001321176.1; NM_001331646.1.
DR RefSeq; NP_001321177.1; NM_001331647.1.
DR RefSeq; NP_001321178.1; NM_001331648.1.
DR RefSeq; NP_001321179.1; NM_001331650.1.
DR RefSeq; NP_001321180.1; NM_001331651.1.
DR RefSeq; NP_001321181.1; NM_001331652.1.
DR RefSeq; NP_001321182.1; NM_001331659.1.
DR RefSeq; NP_001321183.1; NM_001331660.1.
DR RefSeq; NP_001321184.1; NM_001331657.1.
DR RefSeq; NP_001321185.1; NM_001331658.1.
DR RefSeq; NP_001321186.1; NM_001331655.1.
DR RefSeq; NP_001321187.1; NM_001331656.1.
DR RefSeq; NP_001321188.1; NM_001331661.1.
DR RefSeq; NP_001321189.1; NM_001331662.1.
DR RefSeq; NP_172156.2; NM_100548.2.
DR AlphaFoldDB; Q9M9X9; -.
DR SMR; Q9M9X9; -.
DR STRING; 3702.AT1G06710.1; -.
DR PaxDb; Q9M9X9; -.
DR PRIDE; Q9M9X9; -.
DR EnsemblPlants; AT1G06710.10; AT1G06710.10; AT1G06710.
DR EnsemblPlants; AT1G06710.11; AT1G06710.11; AT1G06710.
DR EnsemblPlants; AT1G06710.14; AT1G06710.14; AT1G06710.
DR EnsemblPlants; AT1G06710.15; AT1G06710.15; AT1G06710.
DR EnsemblPlants; AT1G06710.16; AT1G06710.16; AT1G06710.
DR EnsemblPlants; AT1G06710.17; AT1G06710.17; AT1G06710.
DR EnsemblPlants; AT1G06710.18; AT1G06710.18; AT1G06710.
DR GeneID; 837181; -.
DR Gramene; AT1G06710.10; AT1G06710.10; AT1G06710.
DR Gramene; AT1G06710.11; AT1G06710.11; AT1G06710.
DR Gramene; AT1G06710.14; AT1G06710.14; AT1G06710.
DR Gramene; AT1G06710.15; AT1G06710.15; AT1G06710.
DR Gramene; AT1G06710.16; AT1G06710.16; AT1G06710.
DR Gramene; AT1G06710.17; AT1G06710.17; AT1G06710.
DR Gramene; AT1G06710.18; AT1G06710.18; AT1G06710.
DR KEGG; ath:AT1G06710; -.
DR Araport; AT1G06710; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_2_1; -.
DR InParanoid; Q9M9X9; -.
DR OMA; QTYWPKH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9M9X9; -.
DR PRO; PR:Q9M9X9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9M9X9; baseline and differential.
DR Genevisible; Q9M9X9; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 8.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 7.
DR TIGRFAMs; TIGR00756; PPR; 16.
DR PROSITE; PS51375; PPR; 21.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..42
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 43..987
FT /note="Pentatricopeptide repeat-containing protein
FT At1g06710, mitochondrial"
FT /id="PRO_0000342759"
FT REPEAT 164..198
FT /note="PPR 1"
FT REPEAT 199..233
FT /note="PPR 2"
FT REPEAT 234..268
FT /note="PPR 3"
FT REPEAT 269..299
FT /note="PPR 4"
FT REPEAT 301..335
FT /note="PPR 5"
FT REPEAT 336..370
FT /note="PPR 6"
FT REPEAT 371..405
FT /note="PPR 7"
FT REPEAT 406..446
FT /note="PPR 8"
FT REPEAT 447..481
FT /note="PPR 9"
FT REPEAT 482..516
FT /note="PPR 10"
FT REPEAT 517..551
FT /note="PPR 11"
FT REPEAT 552..586
FT /note="PPR 12"
FT REPEAT 587..621
FT /note="PPR 13"
FT REPEAT 638..672
FT /note="PPR 14"
FT REPEAT 673..707
FT /note="PPR 15"
FT REPEAT 708..742
FT /note="PPR 16"
FT REPEAT 743..777
FT /note="PPR 17"
FT REPEAT 778..812
FT /note="PPR 18"
FT REPEAT 813..847
FT /note="PPR 19"
FT REPEAT 881..915
FT /note="PPR 20"
FT REPEAT 918..952
FT /note="PPR 21"
FT REPEAT 953..987
FT /note="PPR 22"
FT CONFLICT 109
FT /note="S -> T (in Ref. 3; AAV58825)"
FT /evidence="ECO:0000305"
FT CONFLICT 201
FT /note="E -> Q (in Ref. 3; AAV58825)"
FT /evidence="ECO:0000305"
FT CONFLICT 426
FT /note="C -> F (in Ref. 3; AAV58825)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 987 AA; 111533 MW; 37DEBBD33DA5DEB5 CRC64;
MNKTVVRCLL SRSHHPLIHF STNLSLLHRV FTCSRYLTAR FMSTPPPDDM FGFDDPFSPS
DSREVVDLTK EYSFLHDSLV DYGNVNVHQV VPIITQSSID ARAIADAVSG VDDVFGRKSQ
KFLRQFREKL SESLVIEVLR LIARPSAVIS FFVWAGRQIG YKHTAPVYNA LVDLIVRDDD
EKVPEEFLQQ IRDDDKEVFG EFLNVLVRKH CRNGSFSIAL EELGRLKDFR FRPSRSTYNC
LIQAFLKADR LDSASLIHRE MSLANLRMDG FTLRCFAYSL CKVGKWREAL TLVETENFVP
DTVFYTKLIS GLCEASLFEE AMDFLNRMRA TSCLPNVVTY STLLCGCLNK KQLGRCKRVL
NMMMMEGCYP SPKIFNSLVH AYCTSGDHSY AYKLLKKMVK CGHMPGYVVY NILIGSICGD
KDSLNCDLLD LAEKAYSEML AAGVVLNKIN VSSFTRCLCS AGKYEKAFSV IREMIGQGFI
PDTSTYSKVL NYLCNASKME LAFLLFEEMK RGGLVADVYT YTIMVDSFCK AGLIEQARKW
FNEMREVGCT PNVVTYTALI HAYLKAKKVS YANELFETML SEGCLPNIVT YSALIDGHCK
AGQVEKACQI FERMCGSKDV PDVDMYFKQY DDNSERPNVV TYGALLDGFC KSHRVEEARK
LLDAMSMEGC EPNQIVYDAL IDGLCKVGKL DEAQEVKTEM SEHGFPATLY TYSSLIDRYF
KVKRQDLASK VLSKMLENSC APNVVIYTEM IDGLCKVGKT DEAYKLMQMM EEKGCQPNVV
TYTAMIDGFG MIGKIETCLE LLERMGSKGV APNYVTYRVL IDHCCKNGAL DVAHNLLEEM
KQTHWPTHTA GYRKVIEGFN KEFIESLGLL DEIGQDDTAP FLSVYRLLID NLIKAQRLEM
ALRLLEEVAT FSATLVDYSS TYNSLIESLC LANKVETAFQ LFSEMTKKGV IPEMQSFCSL
IKGLFRNSKI SEALLLLDFI SHMVCPL
