PPR19_ARATH
ID PPR19_ARATH Reviewed; 534 AA.
AC Q940Q2; Q9LNY2;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g07590, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g07590; ORFNames=F22G5.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79544.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC022464; AAF79544.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28146.1; -; Genomic_DNA.
DR EMBL; AY054199; AAL06860.1; -; mRNA.
DR RefSeq; NP_172238.1; NM_100632.3.
DR AlphaFoldDB; Q940Q2; -.
DR SMR; Q940Q2; -.
DR BioGRID; 22513; 1.
DR STRING; 3702.AT1G07590.1; -.
DR PaxDb; Q940Q2; -.
DR PRIDE; Q940Q2; -.
DR ProteomicsDB; 234892; -.
DR EnsemblPlants; AT1G07590.1; AT1G07590.1; AT1G07590.
DR GeneID; 837272; -.
DR Gramene; AT1G07590.1; AT1G07590.1; AT1G07590.
DR KEGG; ath:AT1G07590; -.
DR Araport; AT1G07590; -.
DR TAIR; locus:2024952; AT1G07590.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_4_0_1; -.
DR InParanoid; Q940Q2; -.
DR OMA; WLETTHM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q940Q2; -.
DR PRO; PR:Q940Q2; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q940Q2; baseline and differential.
DR Genevisible; Q940Q2; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 6.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..20
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 21..534
FT /note="Pentatricopeptide repeat-containing protein
FT At1g07590, mitochondrial"
FT /id="PRO_0000342760"
FT REPEAT 165..199
FT /note="PPR 1"
FT REPEAT 200..234
FT /note="PPR 2"
FT REPEAT 235..269
FT /note="PPR 3"
FT REPEAT 270..300
FT /note="PPR 4"
FT REPEAT 305..335
FT /note="PPR 5"
FT REPEAT 339..369
FT /note="PPR 6"
FT REPEAT 374..408
FT /note="PPR 7"
FT REPEAT 409..443
FT /note="PPR 8"
FT REPEAT 451..485
FT /note="PPR 9"
SQ SEQUENCE 534 AA; 60849 MW; 9BBEBF74189658A8 CRC64;
MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE
EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV YHAINRLRKL GRNKRALELM
EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG
VIRLALEYMK KMRELGYRTS HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH
ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE
ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE MTGNGFKPNS ITYRHLALGC
AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN
AKYNRYAFVY NALFKAYVKA KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP
