PPR1_ARATH
ID PPR1_ARATH Reviewed; 409 AA.
AC Q9LPC4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g01970;
GN OrderedLocusNames=At1g01970; ORFNames=F22M8.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC020622; AAF76475.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27361.1; -; Genomic_DNA.
DR EMBL; BT010352; AAQ56795.1; -; mRNA.
DR EMBL; AK227853; BAE99830.1; -; mRNA.
DR PIR; F86151; F86151.
DR RefSeq; NP_171699.1; NM_100077.4.
DR AlphaFoldDB; Q9LPC4; -.
DR SMR; Q9LPC4; -.
DR BioGRID; 24534; 1.
DR IntAct; Q9LPC4; 1.
DR STRING; 3702.AT1G01970.1; -.
DR PaxDb; Q9LPC4; -.
DR PRIDE; Q9LPC4; -.
DR ProteomicsDB; 226368; -.
DR EnsemblPlants; AT1G01970.1; AT1G01970.1; AT1G01970.
DR GeneID; 839299; -.
DR Gramene; AT1G01970.1; AT1G01970.1; AT1G01970.
DR KEGG; ath:AT1G01970; -.
DR Araport; AT1G01970; -.
DR TAIR; locus:2025442; AT1G01970.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_053045_0_0_1; -.
DR InParanoid; Q9LPC4; -.
DR OMA; IGPNITE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LPC4; -.
DR PRO; PR:Q9LPC4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LPC4; baseline and differential.
DR Genevisible; Q9LPC4; AT.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR044657; NFD5-like.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR46862; PTHR46862; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 6.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..409
FT /note="Pentatricopeptide repeat-containing protein
FT At1g01970"
FT /id="PRO_0000342742"
FT REPEAT 164..198
FT /note="PPR 1"
FT REPEAT 199..233
FT /note="PPR 2"
FT REPEAT 234..268
FT /note="PPR 3"
FT REPEAT 269..303
FT /note="PPR 4"
FT REPEAT 304..338
FT /note="PPR 5"
FT REPEAT 339..373
FT /note="PPR 6"
SQ SEQUENCE 409 AA; 46077 MW; F1DB0AE525D15ED2 CRC64;
MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE
KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA LMRQIICFSP EKGSFCDLLG
AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ
VEDAERTLLS MKNRGFLIDQ VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS
MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL
GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE FSSSQSQPL
