PPR20_ARATH
ID PPR20_ARATH Reviewed; 459 AA.
AC Q9LQQ1;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g07740, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g07740; ORFNames=F24B9.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007583; AAF75079.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28171.1; -; Genomic_DNA.
DR EMBL; AY042798; AAK68738.1; -; mRNA.
DR EMBL; BT008759; AAP49521.1; -; mRNA.
DR EMBL; AK176347; BAD44110.1; -; mRNA.
DR PIR; G86212; G86212.
DR RefSeq; NP_172253.1; NM_100648.2.
DR AlphaFoldDB; Q9LQQ1; -.
DR SMR; Q9LQQ1; -.
DR BioGRID; 22529; 2.
DR IntAct; Q9LQQ1; 2.
DR STRING; 3702.AT1G07740.1; -.
DR PaxDb; Q9LQQ1; -.
DR PRIDE; Q9LQQ1; -.
DR ProteomicsDB; 226369; -.
DR EnsemblPlants; AT1G07740.1; AT1G07740.1; AT1G07740.
DR GeneID; 837288; -.
DR Gramene; AT1G07740.1; AT1G07740.1; AT1G07740.
DR KEGG; ath:AT1G07740; -.
DR Araport; AT1G07740; -.
DR TAIR; locus:2026560; AT1G07740.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9LQQ1; -.
DR OMA; GHRRKKF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LQQ1; -.
DR PRO; PR:Q9LQQ1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LQQ1; baseline and differential.
DR Genevisible; Q9LQQ1; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..20
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 21..459
FT /note="Pentatricopeptide repeat-containing protein
FT At1g07740, mitochondrial"
FT /id="PRO_0000342761"
FT REPEAT 80..114
FT /note="PPR 1"
FT REPEAT 115..149
FT /note="PPR 2"
FT REPEAT 150..184
FT /note="PPR 3"
FT REPEAT 185..219
FT /note="PPR 4"
FT REPEAT 220..254
FT /note="PPR 5"
FT REPEAT 255..289
FT /note="PPR 6"
FT REPEAT 290..324
FT /note="PPR 7"
FT REPEAT 325..359
FT /note="PPR 8"
FT REPEAT 360..394
FT /note="PPR 9"
FT REPEAT 395..429
FT /note="PPR 10"
FT REGION 19..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..41
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 459 AA; 52295 MW; 9D23A50FB5262346 CRC64;
MRRRLSSVLI NNQCIASQRH YHTSRPEKPT KKASSHEPTH KFTRKPWEEV PFLTDLKEIE
DPEEALSLFH QYQEMGFRHD YPSYSSLIYK LAKSRNFDAV DQILRLVRYR NVRCRESLFM
GLIQHYGKAG SVDKAIDVFH KITSFDCVRT IQSLNTLINV LVDNGELEKA KSFFDGAKDM
RLRPNSVSFN ILIKGFLDKC DWEAACKVFD EMLEMEVQPS VVTYNSLIGF LCRNDDMGKA
KSLLEDMIKK RIRPNAVTFG LLMKGLCCKG EYNEAKKLMF DMEYRGCKPG LVNYGILMSD
LGKRGRIDEA KLLLGEMKKR RIKPDVVIYN ILVNHLCTEC RVPEAYRVLT EMQMKGCKPN
AATYRMMIDG FCRIEDFDSG LNVLNAMLAS RHCPTPATFV CMVAGLIKGG NLDHACFVLE
VMGKKNLSFG SGAWQNLLSD LCIKDGGVYC EALSEVISI
