PPR22_ARATH
ID PPR22_ARATH Reviewed; 559 AA.
AC Q9FRS4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g08610;
GN OrderedLocusNames=At1g08610; ORFNames=F22O13.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC003981; AAF99781.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28317.1; -; Genomic_DNA.
DR PIR; T00714; T00714.
DR RefSeq; NP_172337.1; NM_100734.3.
DR AlphaFoldDB; Q9FRS4; -.
DR SMR; Q9FRS4; -.
DR STRING; 3702.AT1G08610.1; -.
DR PaxDb; Q9FRS4; -.
DR PRIDE; Q9FRS4; -.
DR ProteomicsDB; 234834; -.
DR EnsemblPlants; AT1G08610.1; AT1G08610.1; AT1G08610.
DR GeneID; 837383; -.
DR Gramene; AT1G08610.1; AT1G08610.1; AT1G08610.
DR KEGG; ath:AT1G08610; -.
DR Araport; AT1G08610; -.
DR TAIR; locus:2025580; AT1G08610.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9FRS4; -.
DR OMA; LVMGFCK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FRS4; -.
DR PRO; PR:Q9FRS4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FRS4; baseline and differential.
DR Genevisible; Q9FRS4; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..559
FT /note="Pentatricopeptide repeat-containing protein
FT At1g08610"
FT /id="PRO_0000342763"
FT REPEAT 103..137
FT /note="PPR 1"
FT REPEAT 138..172
FT /note="PPR 2"
FT REPEAT 173..207
FT /note="PPR 3"
FT REPEAT 208..242
FT /note="PPR 4"
FT REPEAT 243..277
FT /note="PPR 5"
FT REPEAT 278..312
FT /note="PPR 6"
FT REPEAT 313..347
FT /note="PPR 7"
FT REPEAT 348..382
FT /note="PPR 8"
FT REPEAT 383..417
FT /note="PPR 9"
FT REPEAT 418..452
FT /note="PPR 10"
FT REPEAT 453..487
FT /note="PPR 11"
FT REPEAT 488..522
FT /note="PPR 12"
FT REPEAT 523..557
FT /note="PPR 13"
SQ SEQUENCE 559 AA; 62720 MW; 8A3739482A9938F4 CRC64;
MASSNLLLEV QFLHIPSLSQ KQANPLSCRK FSSLDWKQEI GLKKDVFFRC HGLLSSVCID
NVNDHAERSS EFHHYGVGTN LRARVKPMKQ FGLSSDGPIT ENDEETNNEI LHNLCSNGKL
TDACKLVEVM ARHNQVPHFP SCSNLVRGLA RIDQLDKAMC ILRVMVMSGG VPDTITYNMI
IGNLCKKGHI RTALVLLEDM SLSGSPPDVI TYNTVIRCMF DYGNAEQAIR FWKDQLQNGC
PPFMITYTVL VELVCRYCGS ARAIEVLEDM AVEGCYPDIV TYNSLVNYNC RRGNLEEVAS
VIQHILSHGL ELNTVTYNTL LHSLCSHEYW DEVEEILNIM YQTSYCPTVI TYNILINGLC
KARLLSRAID FFYQMLEQKC LPDIVTYNTV LGAMSKEGMV DDAIELLGLL KNTCCPPGLI
TYNSVIDGLA KKGLMKKALE LYHQMLDAGI FPDDITRRSL IYGFCRANLV EEAGQVLKET
SNRGNGIRGS TYRLVIQGLC KKKEIEMAIE VVEIMLTGGC KPDETIYTAI VKGVEEMGMG
SEAVQLQKKL KQWKLLKEV
