PPR23_ARATH
ID PPR23_ARATH Reviewed; 484 AA.
AC O80488;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g09190;
GN Name=PCMP-E70; OrderedLocusNames=At1g09190; ORFNames=T12M4.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC003114; AAC24086.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28410.1; -; Genomic_DNA.
DR EMBL; BT003981; AAO42022.1; -; mRNA.
DR PIR; E86224; E86224.
DR RefSeq; NP_172391.2; NM_100789.4.
DR AlphaFoldDB; O80488; -.
DR SMR; O80488; -.
DR STRING; 3702.AT1G09190.1; -.
DR PaxDb; O80488; -.
DR PRIDE; O80488; -.
DR ProteomicsDB; 226398; -.
DR EnsemblPlants; AT1G09190.1; AT1G09190.1; AT1G09190.
DR GeneID; 837439; -.
DR Gramene; AT1G09190.1; AT1G09190.1; AT1G09190.
DR KEGG; ath:AT1G09190; -.
DR Araport; AT1G09190; -.
DR TAIR; locus:2195296; AT1G09190.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; O80488; -.
DR OMA; TCCAHAG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O80488; -.
DR PRO; PR:O80488; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O80488; baseline and differential.
DR Genevisible; O80488; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..484
FT /note="Pentatricopeptide repeat-containing protein
FT At1g09190"
FT /id="PRO_0000342764"
FT REPEAT 66..100
FT /note="PPR 1"
FT REPEAT 101..135
FT /note="PPR 2"
FT REPEAT 136..166
FT /note="PPR 3"
FT REPEAT 167..197
FT /note="PPR 4"
FT REPEAT 198..232
FT /note="PPR 5"
FT REPEAT 233..267
FT /note="PPR 6"
FT REPEAT 269..299
FT /note="PPR 7"
FT REPEAT 300..334
FT /note="PPR 8"
FT REPEAT 336..366
FT /note="PPR 9"
FT REPEAT 372..406
FT /note="PPR 10"
FT REGION 407..482
FT /note="Type E motif"
SQ SEQUENCE 484 AA; 53962 MW; 0A8E37D4478C1C62 CRC64;
MEIERKLLRL LHGHNTRTRL PEIHAHLLRH FLHGSNLLLA HFISICGSLS NSDYANRVFS
HIQNPNVLVF NAMIKCYSLV GPPLESLSFF SSMKSRGIWA DEYTYAPLLK SCSSLSDLRF
GKCVHGELIR TGFHRLGKIR IGVVELYTSG GRMGDAQKVF DEMSERNVVV WNLMIRGFCD
SGDVERGLHL FKQMSERSIV SWNSMISSLS KCGRDREALE LFCEMIDQGF DPDEATVVTV
LPISASLGVL DTGKWIHSTA ESSGLFKDFI TVGNALVDFY CKSGDLEAAT AIFRKMQRRN
VVSWNTLISG SAVNGKGEFG IDLFDAMIEE GKVAPNEATF LGVLACCSYT GQVERGEELF
GLMMERFKLE ARTEHYGAMV DLMSRSGRIT EAFKFLKNMP VNANAAMWGS LLSACRSHGD
VKLAEVAAME LVKIEPGNSG NYVLLSNLYA EEGRWQDVEK VRTLMKKNRL RKSTGQSTIC
DVSV
