PPR24_ARATH
ID PPR24_ARATH Reviewed; 504 AA.
AC Q680Z7; O80485; Q6ICY6;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g09220, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E25; OrderedLocusNames=At1g09220; ORFNames=T12M4.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 167-504.
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC24094.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC003114; AAC24094.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28415.1; -; Genomic_DNA.
DR EMBL; AK175431; BAD43194.1; -; mRNA.
DR EMBL; AK175720; BAD43483.1; -; mRNA.
DR EMBL; AK175867; BAD43630.1; -; mRNA.
DR EMBL; AK220750; BAD93927.1; -; mRNA.
DR EMBL; BT014887; AAT42379.1; -; mRNA.
DR PIR; A86225; A86225.
DR RefSeq; NP_172393.2; NM_100792.3.
DR AlphaFoldDB; Q680Z7; -.
DR SMR; Q680Z7; -.
DR STRING; 3702.AT1G09220.1; -.
DR PaxDb; Q680Z7; -.
DR PRIDE; Q680Z7; -.
DR EnsemblPlants; AT1G09220.1; AT1G09220.1; AT1G09220.
DR GeneID; 837442; -.
DR Gramene; AT1G09220.1; AT1G09220.1; AT1G09220.
DR KEGG; ath:AT1G09220; -.
DR Araport; AT1G09220; -.
DR TAIR; locus:2195321; AT1G09220.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q680Z7; -.
DR OMA; MHGMAKE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q680Z7; -.
DR PRO; PR:Q680Z7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q680Z7; baseline and differential.
DR Genevisible; Q680Z7; AT.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..87
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 88..504
FT /note="Pentatricopeptide repeat-containing protein
FT At1g09220, mitochondrial"
FT /id="PRO_0000342765"
FT REPEAT 76..110
FT /note="PPR 1"
FT REPEAT 120..156
FT /note="PPR 2"
FT REPEAT 157..187
FT /note="PPR 3"
FT REPEAT 188..222
FT /note="PPR 4"
FT REPEAT 223..253
FT /note="PPR 5"
FT REPEAT 255..289
FT /note="PPR 6"
FT REPEAT 291..321
FT /note="PPR 7"
FT REPEAT 324..358
FT /note="PPR 8"
FT REPEAT 359..390
FT /note="PPR 9"
FT REPEAT 396..430
FT /note="PPR 10"
FT REGION 431..504
FT /note="Type E motif; degenerate"
SQ SEQUENCE 504 AA; 57134 MW; 7268B60F821F4878 CRC64;
MFLFSSRRIT SLRSYTIIKH SSCYSTLVSD GNIFSIQHFQ SLMQKYESNL KIIHQLHSHF
TTSGFLLLHQ KQNSGKLFLF NPLLRCYSLG ETPLHAYFLY DQLQRLHFLS DHNKSLPPFD
SFTYLFLLKA SSNPRFPSLL LGIGLHGLTL KLGFESHVYV QTALVGMYLV GGNMIDAHKV
FDEMPERNPV TWNVMITGLT NLGDFEKALC FLEKMPNRTV VSWTTIIDGY ARVDKPKEAI
LLFSRMVACD AIKPNEITIL AILPAVWNLG DLKMCGSVHA YVGKRGFVPC DIRVTNSLID
AYAKCGCIQS AFKFFIEIPN GRKNLVSWTT MISAFAIHGM GKEAVSMFKD MERLGLKPNR
VTMISVLNAC SHGGLAEEEF LEFFNTMVNE YKITPDVKHY GCLVDMLRRK GRLEEAEKIA
LEIPIEEKAV VWRMLLGACS VYDDAELAER VTRKLMELER SHGGDYVLMS NIFCGTGRFL
DAQRFRKQMD VRGVAKLPGH SQVT
