PPR27_ARATH
ID PPR27_ARATH Reviewed; 606 AA.
AC O04504;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1997, sequence version 1.
DT 25-MAY-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g09820;
GN OrderedLocusNames=At1g09820; ORFNames=F21M12.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC000132; AAB60736.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28499.1; -; Genomic_DNA.
DR PIR; D86232; D86232.
DR RefSeq; NP_172453.1; NM_100856.3.
DR AlphaFoldDB; O04504; -.
DR SMR; O04504; -.
DR STRING; 3702.AT1G09820.1; -.
DR PaxDb; O04504; -.
DR PRIDE; O04504; -.
DR ProteomicsDB; 226165; -.
DR EnsemblPlants; AT1G09820.1; AT1G09820.1; AT1G09820.
DR GeneID; 837514; -.
DR Gramene; AT1G09820.1; AT1G09820.1; AT1G09820.
DR KEGG; ath:AT1G09820; -.
DR Araport; AT1G09820; -.
DR TAIR; locus:2024301; AT1G09820.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; O04504; -.
DR OMA; KQHWSEL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O04504; -.
DR PRO; PR:O04504; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O04504; baseline and differential.
DR Genevisible; O04504; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..606
FT /note="Pentatricopeptide repeat-containing protein
FT At1g09820"
FT /id="PRO_0000342768"
FT REPEAT 152..186
FT /note="PPR 1"
FT REPEAT 187..221
FT /note="PPR 2"
FT REPEAT 222..256
FT /note="PPR 3"
FT REPEAT 257..294
FT /note="PPR 4"
FT REPEAT 295..329
FT /note="PPR 5"
FT REPEAT 330..364
FT /note="PPR 6"
FT REPEAT 365..399
FT /note="PPR 7"
FT REPEAT 400..434
FT /note="PPR 8"
FT REPEAT 435..465
FT /note="PPR 9"
FT REPEAT 469..503
FT /note="PPR 10"
FT REPEAT 504..534
FT /note="PPR 11"
FT REPEAT 540..574
FT /note="PPR 12"
SQ SEQUENCE 606 AA; 68047 MW; 8E2541798A514105 CRC64;
MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV
HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS LELTFKLLHS LANAKRYSKI
RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG
YYGYKLSALS CKPLMIALLK ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN
KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA
GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT TRMYNMLIDA YCKLGKIDDG
FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY
CRKGESRKAA MLLKEMSKMG LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN
VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
NVSTKS
