PPR28_ARATH
ID PPR28_ARATH Reviewed; 598 AA.
AC Q3EDF8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 25-MAY-2022, entry version 91.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g09900;
GN OrderedLocusNames=At1g09900; ORFNames=F21M12.38;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC000132; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002684; AEE28512.1; -; Genomic_DNA.
DR RefSeq; NP_172461.1; NM_100864.1.
DR AlphaFoldDB; Q3EDF8; -.
DR SMR; Q3EDF8; -.
DR STRING; 3702.AT1G09900.1; -.
DR iPTMnet; Q3EDF8; -.
DR PaxDb; Q3EDF8; -.
DR PRIDE; Q3EDF8; -.
DR ProteomicsDB; 226214; -.
DR EnsemblPlants; AT1G09900.1; AT1G09900.1; AT1G09900.
DR GeneID; 837522; -.
DR Gramene; AT1G09900.1; AT1G09900.1; AT1G09900.
DR KEGG; ath:AT1G09900; -.
DR Araport; AT1G09900; -.
DR TAIR; locus:2024296; AT1G09900.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q3EDF8; -.
DR OMA; AILACKG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q3EDF8; -.
DR PRO; PR:Q3EDF8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q3EDF8; baseline and differential.
DR Genevisible; Q3EDF8; AT.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..598
FT /note="Pentatricopeptide repeat-containing protein
FT At1g09900"
FT /id="PRO_0000342769"
FT REPEAT 101..135
FT /note="PPR 1"
FT REPEAT 136..170
FT /note="PPR 2"
FT REPEAT 171..201
FT /note="PPR 3"
FT REPEAT 203..237
FT /note="PPR 4"
FT REPEAT 238..272
FT /note="PPR 5"
FT REPEAT 273..307
FT /note="PPR 6"
FT REPEAT 308..342
FT /note="PPR 7"
FT REPEAT 343..377
FT /note="PPR 8"
FT REPEAT 378..412
FT /note="PPR 9"
FT REPEAT 413..447
FT /note="PPR 10"
FT REPEAT 448..482
FT /note="PPR 11"
FT REPEAT 483..517
FT /note="PPR 12"
FT REPEAT 518..552
FT /note="PPR 13"
FT REPEAT 553..587
FT /note="PPR 14"
SQ SEQUENCE 598 AA; 66256 MW; E97E50C2D79D6F55 CRC64;
MDLMVSTSSA QEGFCLIQQF HREYKRGNKL DVSCRTSGSI SSKIPLGSRK RNRLVLVSAA
SKVESSGLNG RAQKFETLSS GYSNSNGNGH YSSVNSSFAL EDVESNNHLR QMVRTGELEE
GFKFLENMVY HGNVPDIIPC TTLIRGFCRL GKTRKAAKIL EILEGSGAVP DVITYNVMIS
GYCKAGEINN ALSVLDRMSV SPDVVTYNTI LRSLCDSGKL KQAMEVLDRM LQRDCYPDVI
TYTILIEATC RDSGVGHAMK LLDEMRDRGC TPDVVTYNVL VNGICKEGRL DEAIKFLNDM
PSSGCQPNVI THNIILRSMC STGRWMDAEK LLADMLRKGF SPSVVTFNIL INFLCRKGLL
GRAIDILEKM PQHGCQPNSL SYNPLLHGFC KEKKMDRAIE YLERMVSRGC YPDIVTYNTM
LTALCKDGKV EDAVEILNQL SSKGCSPVLI TYNTVIDGLA KAGKTGKAIK LLDEMRAKDL
KPDTITYSSL VGGLSREGKV DEAIKFFHEF ERMGIRPNAV TFNSIMLGLC KSRQTDRAID
FLVFMINRGC KPNETSYTIL IEGLAYEGMA KEALELLNEL CNKGLMKKSS AEQVAGKM
