PPR2_ARATH
ID PPR2_ARATH Reviewed; 710 AA.
AC O81908;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g02060, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At1g02060; ORFNames=T7I23.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC24378.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; U89959; AAC24378.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE27372.1; -; Genomic_DNA.
DR PIR; F86152; F86152.
DR RefSeq; NP_171708.1; NM_100086.4.
DR AlphaFoldDB; O81908; -.
DR SMR; O81908; -.
DR PaxDb; O81908; -.
DR PRIDE; O81908; -.
DR ProteomicsDB; 236585; -.
DR EnsemblPlants; AT1G02060.1; AT1G02060.1; AT1G02060.
DR GeneID; 839279; -.
DR Gramene; AT1G02060.1; AT1G02060.1; AT1G02060.
DR KEGG; ath:AT1G02060; -.
DR Araport; AT1G02060; -.
DR TAIR; locus:2205609; AT1G02060.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_24_1; -.
DR InParanoid; O81908; -.
DR OMA; AKQMRRA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O81908; -.
DR PRO; PR:O81908; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O81908; baseline and differential.
DR Genevisible; O81908; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..21
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 22..710
FT /note="Pentatricopeptide repeat-containing protein
FT At1g02060, chloroplastic"
FT /id="PRO_0000342743"
FT REPEAT 137..171
FT /note="PPR 1"
FT REPEAT 172..202
FT /note="PPR 2"
FT REPEAT 208..242
FT /note="PPR 3"
FT REPEAT 243..277
FT /note="PPR 4"
FT REPEAT 280..314
FT /note="PPR 5"
FT REPEAT 315..351
FT /note="PPR 6"
FT REPEAT 352..386
FT /note="PPR 7"
FT REPEAT 387..421
FT /note="PPR 8"
FT REPEAT 429..459
FT /note="PPR 9"
FT REPEAT 463..497
FT /note="PPR 10"
FT REPEAT 498..532
FT /note="PPR 11"
FT REPEAT 533..567
FT /note="PPR 12"
SQ SEQUENCE 710 AA; 80832 MW; 6B545411C7EA88FB CRC64;
MVSSVPKLHA LFVSKSQPVL RAAKVTNEER STKSKLARSL ARAVNSNPWS DELESSLSSL
HPSQTISRTT VLQTLRLIKV PADGLRFFDW VSNKGFSHKE QSFFLMLEFL GRARNLNVAR
NFLFSIERRS NGCVKLQDRY FNSLIRSYGN AGLFQESVKL FQTMKQMGIS PSVLTFNSLL
SILLKRGRTG MAHDLFDEMR RTYGVTPDSY TFNTLINGFC KNSMVDEAFR IFKDMELYHC
NPDVVTYNTI IDGLCRAGKV KIAHNVLSGM LKKATDVHPN VVSYTTLVRG YCMKQEIDEA
VLVFHDMLSR GLKPNAVTYN TLIKGLSEAH RYDEIKDILI GGNDAFTTFA PDACTFNILI
KAHCDAGHLD AAMKVFQEML NMKLHPDSAS YSVLIRTLCM RNEFDRAETL FNELFEKEVL
LGKDECKPLA AAYNPMFEYL CANGKTKQAE KVFRQLMKRG VQDPPSYKTL ITGHCREGKF
KPAYELLVLM LRREFVPDLE TYELLIDGLL KIGEALLAHD TLQRMLRSSY LPVATTFHSV
LAELAKRKFA NESFCLVTLM LEKRIRQNID LSTQVVRLLF SSAQKEKAFL IVRLLYDNGY
LVKMEELLGY LCENRKLLDA HTLVLFCLEK SQMVDIDTCN TVIEGLCKHK RHSEAFSLYN
ELVELGNHQQ LSCHVVLRNA LEAAGKWEEL QFVSKRMATL RESDDCSVLE
