PPR30_ARATH
ID PPR30_ARATH Reviewed; 467 AA.
AC Q9SY75;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g10330;
GN Name=PCMP-E71; OrderedLocusNames=At1g10330; ORFNames=F14N23.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005489; AAD32883.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28566.1; -; Genomic_DNA.
DR PIR; D86237; D86237.
DR RefSeq; NP_172504.1; NM_100907.2.
DR AlphaFoldDB; Q9SY75; -.
DR SMR; Q9SY75; -.
DR PaxDb; Q9SY75; -.
DR PRIDE; Q9SY75; -.
DR EnsemblPlants; AT1G10330.1; AT1G10330.1; AT1G10330.
DR GeneID; 837572; -.
DR Gramene; AT1G10330.1; AT1G10330.1; AT1G10330.
DR KEGG; ath:AT1G10330; -.
DR Araport; AT1G10330; -.
DR TAIR; locus:2012858; AT1G10330.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9SY75; -.
DR OMA; LQPQHCG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SY75; -.
DR PRO; PR:Q9SY75; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SY75; baseline and differential.
DR Genevisible; Q9SY75; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 8.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..467
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g10330"
FT /id="PRO_0000342771"
FT REPEAT 50..84
FT /note="PPR 1"
FT REPEAT 85..119
FT /note="PPR 2"
FT REPEAT 120..150
FT /note="PPR 3"
FT REPEAT 151..181
FT /note="PPR 4"
FT REPEAT 182..216
FT /note="PPR 5"
FT REPEAT 220..256
FT /note="PPR 6"
FT REPEAT 257..287
FT /note="PPR 7"
FT REPEAT 288..322
FT /note="PPR 8"
FT REPEAT 323..358
FT /note="PPR 9"
FT REPEAT 359..389
FT /note="PPR 10"
FT REGION 394..467
FT /note="Type E motif; degenerate"
SQ SEQUENCE 467 AA; 51431 MW; 80C19EF2E1813AF0 CRC64;
MRCTSFSSFS LSLEDALHLL QRFLYSSNQI KQIHTVLLTS NALVASRWKT KCVYNTLIRS
YLTTGEYKTS LALFTHMLAS HVQPNNLTFP SLIKAACSSF SVSYGVALHG QALKRGFLWD
PFVQTSFVRF YGEVGDLESS RKMFDDILNP CVVACNSLLD ACGRNGEMDY AFEYFQRMPV
TDVVSWTTVI NGFSKKGLHA KALMVFGEMI QNERAVITPN EATFVSVLSS CANFDQGGIR
LGKQIHGYVM SKEIILTTTL GTALLDMYGK AGDLEMALTI FDQIRDKKVC AWNAIISALA
SNGRPKQALE MFEMMKSSYV HPNGITLLAI LTACARSKLV DLGIQLFSSI CSEYKIIPTS
EHYGCVVDLI GRAGLLVDAA NFIQSLPFEP DASVLGALLG ACKIHENTEL GNTVGKQLIG
LQPQHCGQYV ALSTFNALDS NWSEAEKMRK AMIEAGIRKI PAYSVLT