PPR31_ARATH
ID PPR31_ARATH Reviewed; 664 AA.
AC Q0WVV0; O04094;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g10910, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At1g10910; ORFNames=T19D16.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB65486.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; U95973; AAB65486.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28662.1; -; Genomic_DNA.
DR EMBL; AK226637; BAE98748.1; -; mRNA.
DR PIR; H86242; H86242.
DR RefSeq; NP_172560.2; NM_100966.3.
DR AlphaFoldDB; Q0WVV0; -.
DR SMR; Q0WVV0; -.
DR PaxDb; Q0WVV0; -.
DR PRIDE; Q0WVV0; -.
DR ProteomicsDB; 226402; -.
DR EnsemblPlants; AT1G10910.1; AT1G10910.1; AT1G10910.
DR GeneID; 837634; -.
DR Gramene; AT1G10910.1; AT1G10910.1; AT1G10910.
DR KEGG; ath:AT1G10910; -.
DR Araport; AT1G10910; -.
DR TAIR; locus:2197424; AT1G10910.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_022912_0_0_1; -.
DR InParanoid; Q0WVV0; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q0WVV0; -.
DR PRO; PR:Q0WVV0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q0WVV0; baseline and differential.
DR Genevisible; Q0WVV0; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
DR GO; GO:1900865; P:chloroplast RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..72
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 73..664
FT /note="Pentatricopeptide repeat-containing protein
FT At1g10910, chloroplastic"
FT /id="PRO_0000342772"
FT REPEAT 165..199
FT /note="PPR 1"
FT REPEAT 200..235
FT /note="PPR 2"
FT REPEAT 236..270
FT /note="PPR 3"
FT REPEAT 271..305
FT /note="PPR 4"
FT REPEAT 306..340
FT /note="PPR 5"
FT REPEAT 341..375
FT /note="PPR 6"
FT REPEAT 376..406
FT /note="PPR 7"
FT REPEAT 411..445
FT /note="PPR 8"
FT REPEAT 446..480
FT /note="PPR 9"
SQ SEQUENCE 664 AA; 75099 MW; EE7B9329F30A67D2 CRC64;
METPLLVGLE LRCPPHLFNT HSRPSSSLSI PALSLRILTP TAATTSSAVI ELPANVAEAP
RSKRHSNSYL ARKSAISEVQ RSSDFLSSLQ RLATVLKVQD LNVILRDFGI SGRWQDLIQL
FEWMQQHGKI SVSTYSSCIK FVGAKNVSKA LEIYQSIPDE STKINVYICN SILSCLVKNG
KLDSCIKLFD QMKRDGLKPD VVTYNTLLAG CIKVKNGYPK AIELIGELPH NGIQMDSVMY
GTVLAICASN GRSEEAENFI QQMKVEGHSP NIYHYSSLLN SYSWKGDYKK ADELMTEMKS
IGLVPNKVMM TTLLKVYIKG GLFDRSRELL SELESAGYAE NEMPYCMLMD GLSKAGKLEE
ARSIFDDMKG KGVRSDGYAN SIMISALCRS KRFKEAKELS RDSETTYEKC DLVMLNTMLC
AYCRAGEMES VMRMMKKMDE QAVSPDYNTF HILIKYFIKE KLHLLAYQTT LDMHSKGHRL
EEELCSSLIY HLGKIRAQAE AFSVYNMLRY SKRTICKELH EKILHILIQG NLLKDAYIVV
KDNAKMISQP TLKKFGRAFM ISGNINLVND VLKVLHGSGH KIDQVQFEIA ISRYISQPDK
KELLLQLLQW MPGQGYVVDS STRNLILKNS HMFGRLLIAE ILSKHHVASR PMIKSRPEQK
FRCK
