PPR33_ARATH
ID PPR33_ARATH Reviewed; 405 AA.
AC Q9SAB4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g11630, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g11630; ORFNames=F25C20.22;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RC STRAIN=cv. Landsberg erecta;
RX PubMed=14671022; DOI=10.1105/tpc.016055;
RA Heazlewood J.L., Tonti-Filippini J.S., Gout A.M., Day D.A., Whelan J.,
RA Millar A.H.;
RT "Experimental analysis of the Arabidopsis mitochondrial proteome highlights
RT signaling and regulatory components, provides assessment of targeting
RT prediction programs, and indicates plant-specific mitochondrial proteins.";
RL Plant Cell 16:241-256(2004).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:14671022}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007296; AAD30260.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28763.1; -; Genomic_DNA.
DR EMBL; AF385742; AAK60332.1; -; mRNA.
DR EMBL; AY081736; AAL87389.1; -; mRNA.
DR EMBL; AY087752; AAM65288.1; -; mRNA.
DR PIR; G86249; G86249.
DR RefSeq; NP_172629.1; NM_101036.3.
DR AlphaFoldDB; Q9SAB4; -.
DR SMR; Q9SAB4; -.
DR BioGRID; 22947; 1.
DR STRING; 3702.AT1G11630.1; -.
DR PaxDb; Q9SAB4; -.
DR PRIDE; Q9SAB4; -.
DR ProteomicsDB; 234860; -.
DR EnsemblPlants; AT1G11630.1; AT1G11630.1; AT1G11630.
DR GeneID; 837707; -.
DR Gramene; AT1G11630.1; AT1G11630.1; AT1G11630.
DR KEGG; ath:AT1G11630; -.
DR Araport; AT1G11630; -.
DR TAIR; locus:2027387; AT1G11630.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_10_3_1; -.
DR InParanoid; Q9SAB4; -.
DR OMA; LYGRANM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SAB4; -.
DR PRO; PR:Q9SAB4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SAB4; baseline and differential.
DR Genevisible; Q9SAB4; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 8.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..72
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 73..405
FT /note="Pentatricopeptide repeat-containing protein
FT At1g11630, mitochondrial"
FT /id="PRO_0000342774"
FT REPEAT 74..108
FT /note="PPR 1"
FT REPEAT 110..144
FT /note="PPR 2"
FT REPEAT 145..180
FT /note="PPR 3"
FT REPEAT 181..215
FT /note="PPR 4"
FT REPEAT 216..250
FT /note="PPR 5"
FT REPEAT 251..285
FT /note="PPR 6"
FT REPEAT 286..320
FT /note="PPR 7"
FT REPEAT 321..355
FT /note="PPR 8"
FT REPEAT 356..386
FT /note="PPR 9"
SQ SEQUENCE 405 AA; 46389 MW; 4D181EA10C4BE0F4 CRC64;
MAFLFRIRTS EFILQKATQF RLKSSSSSIF TLKSLTSKQK KSRDTLSLLK SENNPDRILE
ICRSTSLSPD YHVDRIIFSV AVVTLAREKH FVAVSQLLDG FIQNQPDPKS ESFAVRAIIL
YGRANMLDRS IQTFRNLEQY EIPRTVKSLN ALLFACLMAK DYKEANRVYL EMPKMYGIEP
DLETYNRMIR VLCESGSTSS SYSIVAEMER KWIKPTAASF GLMIDGFYKE EKFDEVRKVM
RMMDEFGVHV GVATYNIMIQ CLCKRKKSAE AKALIDGVMS CRMRPNSVTY SLLIHGFCSE
ENLDEAMNLF EVMVCNGYKP DSECYFTLIH CLCKGGDFET ALILCRESME KNWVPSFSVM
KWLVNGLASR SKVDEAKELI AVVKEKFTRN VDLWNEVEAA LPLPQ
