PPR34_ARATH
ID PPR34_ARATH Reviewed; 657 AA.
AC Q9SAA6;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g11710, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g11710; ORFNames=F25C20.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007296; AAD30252.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28773.1; -; Genomic_DNA.
DR EMBL; AY140003; AAM98145.1; -; mRNA.
DR EMBL; BT008412; AAP37771.1; -; mRNA.
DR PIR; G86250; G86250.
DR RefSeq; NP_172636.1; NM_101043.2.
DR AlphaFoldDB; Q9SAA6; -.
DR SMR; Q9SAA6; -.
DR PaxDb; Q9SAA6; -.
DR PRIDE; Q9SAA6; -.
DR EnsemblPlants; AT1G11710.1; AT1G11710.1; AT1G11710.
DR GeneID; 837715; -.
DR Gramene; AT1G11710.1; AT1G11710.1; AT1G11710.
DR KEGG; ath:AT1G11710; -.
DR Araport; AT1G11710; -.
DR TAIR; locus:2027382; AT1G11710.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9SAA6; -.
DR OMA; NEIDWFW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SAA6; -.
DR PRO; PR:Q9SAA6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SAA6; baseline and differential.
DR Genevisible; Q9SAA6; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..74
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 75..657
FT /note="Pentatricopeptide repeat-containing protein
FT At1g11710, mitochondrial"
FT /id="PRO_0000342775"
FT REPEAT 147..181
FT /note="PPR 1"
FT REPEAT 182..216
FT /note="PPR 2"
FT REPEAT 217..251
FT /note="PPR 3"
FT REPEAT 252..282
FT /note="PPR 4"
FT REPEAT 290..324
FT /note="PPR 5"
FT REPEAT 325..359
FT /note="PPR 6"
FT REPEAT 360..394
FT /note="PPR 7"
FT REPEAT 395..429
FT /note="PPR 8"
FT REPEAT 430..464
FT /note="PPR 9"
FT REPEAT 465..499
FT /note="PPR 10"
FT REPEAT 500..530
FT /note="PPR 11"
FT REPEAT 531..565
FT /note="PPR 12"
FT REPEAT 568..602
FT /note="PPR 13"
FT REPEAT 603..637
FT /note="PPR 14"
SQ SEQUENCE 657 AA; 73983 MW; E86CDF5152847ADA CRC64;
MFGHVFSRRT SFLVRCFHVA KKFSNPEPED ILFSALCLNL RQRRWNTLHQ FSSSLTNPLI
SRVLREFRSS PKLALEFYNW VLRSNTVAKS ENRFEASCVM IHLLVGSRRF DDALSIMANL
MSVEGEKLSP LHVLSGLIRS YQACGSSPDV FDSLVRACTQ NGDAQGAYEV IEQTRAEGFC
VSVHALNNFM GCLLNVNEID RFWKVYKEMD SLGYVENVNT FNLVIYSFCK ESKLFEALSV
FYRMLKCGVW PNVVSFNMMI DGACKTGDMR FALQLLGKMG MMSGNFVSPN AVTYNSVING
FCKAGRLDLA ERIRGDMVKS GVDCNERTYG ALVDAYGRAG SSDEALRLCD EMTSKGLVVN
TVIYNSIVYW LFMEGDIEGA MSVLRDMNSK NMQIDRFTQA IVVRGLCRNG YVKEAVEFQR
QISEKKLVED IVCHNTLMHH FVRDKKLACA DQILGSMLVQ GLSLDAISFG TLIDGYLKEG
KLERALEIYD GMIKMNKTSN LVIYNSIVNG LSKRGMAGAA EAVVNAMEIK DIVTYNTLLN
ESLKTGNVEE ADDILSKMQK QDGEKSVSLV TFNIMINHLC KFGSYEKAKE VLKFMVERGV
VPDSITYGTL ITSFSKHRSQ EKVVELHDYL ILQGVTPHEH IYLSIVRPLL DRENGRP
