PPR37_ARATH
ID PPR37_ARATH Reviewed; 621 AA.
AC Q9ASZ8; Q9LN85;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g12620;
GN OrderedLocusNames=At1g12620; ORFNames=T12C24.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF88095.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC025417; AAF88095.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28902.1; -; Genomic_DNA.
DR EMBL; AF361578; AAK32746.1; -; mRNA.
DR EMBL; BT001023; AAN46777.1; -; mRNA.
DR RefSeq; NP_563911.1; NM_101132.2.
DR AlphaFoldDB; Q9ASZ8; -.
DR SMR; Q9ASZ8; -.
DR BioGRID; 23058; 1.
DR IntAct; Q9ASZ8; 1.
DR STRING; 3702.AT1G12620.1; -.
DR PaxDb; Q9ASZ8; -.
DR PRIDE; Q9ASZ8; -.
DR ProteomicsDB; 234858; -.
DR EnsemblPlants; AT1G12620.1; AT1G12620.1; AT1G12620.
DR GeneID; 837818; -.
DR Gramene; AT1G12620.1; AT1G12620.1; AT1G12620.
DR KEGG; ath:AT1G12620; -.
DR Araport; AT1G12620; -.
DR TAIR; locus:2195047; AT1G12620.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9ASZ8; -.
DR OMA; GKNDCSP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ASZ8; -.
DR PRO; PR:Q9ASZ8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9ASZ8; baseline and differential.
DR Genevisible; Q9ASZ8; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0000966; P:RNA 5'-end processing; IEP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 5.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..621
FT /note="Pentatricopeptide repeat-containing protein
FT At1g12620"
FT /id="PRO_0000342778"
FT REPEAT 36..70
FT /note="PPR 1"
FT REPEAT 71..105
FT /note="PPR 2"
FT REPEAT 106..140
FT /note="PPR 3"
FT REPEAT 141..175
FT /note="PPR 4"
FT REPEAT 176..210
FT /note="PPR 5"
FT REPEAT 211..245
FT /note="PPR 6"
FT REPEAT 246..280
FT /note="PPR 7"
FT REPEAT 281..315
FT /note="PPR 8"
FT REPEAT 316..350
FT /note="PPR 9"
FT REPEAT 351..385
FT /note="PPR 10"
FT REPEAT 386..420
FT /note="PPR 11"
FT REPEAT 421..455
FT /note="PPR 12"
FT REPEAT 456..490
FT /note="PPR 13"
FT REPEAT 491..525
FT /note="PPR 14"
FT REPEAT 526..560
FT /note="PPR 15"
FT REPEAT 561..595
FT /note="PPR 16"
SQ SEQUENCE 621 AA; 69633 MW; 2B987C06AFCD3F95 CRC64;
MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF
QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL KGIAHNLYTL SIMINCCCRC
RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL
NALVNGLCLN GKVSDAVLLI DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE
RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID
GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA NLIDDGLELF RKMSLRGVVA
DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF
EKIEKSKMEL DIGIYNIIIH GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK
GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
KMVVDMLSDG RLKKSFLDML S
