PPR38_ARATH
ID PPR38_ARATH Reviewed; 602 AA.
AC P0C7Q7; F4IDV5; Q9LN78;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g12700; ORFNames=T12C24.31;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF88093.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g12680 and At1g12700.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC025417; AAF88093.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28915.2; -; Genomic_DNA.
DR PIR; D86260; D86260.
DR RefSeq; NP_001318989.1; NM_001332041.1.
DR AlphaFoldDB; P0C7Q7; -.
DR SMR; P0C7Q7; -.
DR STRING; 3702.AT1G12700.1; -.
DR iPTMnet; P0C7Q7; -.
DR PaxDb; P0C7Q7; -.
DR PRIDE; P0C7Q7; -.
DR EnsemblPlants; AT1G12700.1; AT1G12700.1; AT1G12700.
DR GeneID; 837825; -.
DR Gramene; AT1G12700.1; AT1G12700.1; AT1G12700.
DR KEGG; ath:AT1G12700; -.
DR Araport; AT1G12700; -.
DR TAIR; locus:2195103; AT1G12700.
DR eggNOG; KOG0327; Eukaryota.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; P0C7Q7; -.
DR OMA; MWNSELE; -.
DR PhylomeDB; P0C7Q7; -.
DR PRO; PR:P0C7Q7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; P0C7Q7; baseline and differential.
DR Genevisible; P0C7Q7; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0090617; P:mitochondrial mRNA 5'-end processing; IEP:TAIR.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 14.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..95
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 96..602
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g12700, mitochondrial"
FT /id="PRO_0000342779"
FT REPEAT 87..121
FT /note="PPR 1"
FT REPEAT 122..156
FT /note="PPR 2"
FT REPEAT 157..191
FT /note="PPR 3"
FT REPEAT 192..226
FT /note="PPR 4"
FT REPEAT 227..261
FT /note="PPR 5"
FT REPEAT 262..296
FT /note="PPR 6"
FT REPEAT 297..331
FT /note="PPR 7"
FT REPEAT 332..366
FT /note="PPR 8"
FT REPEAT 367..401
FT /note="PPR 9"
FT REPEAT 402..436
FT /note="PPR 10"
FT REPEAT 437..471
FT /note="PPR 11"
FT REPEAT 472..506
FT /note="PPR 12"
FT REPEAT 507..541
FT /note="PPR 13"
FT REPEAT 542..576
FT /note="PPR 14"
SQ SEQUENCE 602 AA; 67178 MW; C2EB5B5DE61BFDE8 CRC64;
MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL
RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR TKQFNLVLDF CKQLELNGIA
HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL
VDRMVENGCQ PDVVTYNSIV NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR
DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV
RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV ANAVTYSILV QGFCQSGKIK
LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII
EGMCKGGKVE DAWNLFCSLP CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA
PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
LS
