PPR39_ARATH
ID PPR39_ARATH Reviewed; 644 AA.
AC Q9LPX2;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 110.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g12775, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g12775; ORFNames=F13K23.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC012187; AAF78482.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28927.1; -; Genomic_DNA.
DR PIR; A86261; A86261.
DR RefSeq; NP_001031033.1; NM_001035956.2.
DR AlphaFoldDB; Q9LPX2; -.
DR SMR; Q9LPX2; -.
DR STRING; 3702.AT1G12775.1; -.
DR PaxDb; Q9LPX2; -.
DR PRIDE; Q9LPX2; -.
DR ProteomicsDB; 234832; -.
DR EnsemblPlants; AT1G12775.1; AT1G12775.1; AT1G12775.
DR GeneID; 3766712; -.
DR Gramene; AT1G12775.1; AT1G12775.1; AT1G12775.
DR KEGG; ath:AT1G12775; -.
DR Araport; AT1G12775; -.
DR TAIR; locus:1009023134; AT1G12775.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9LPX2; -.
DR OMA; LMVSKEC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LPX2; -.
DR PRO; PR:Q9LPX2; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LPX2; baseline and differential.
DR Genevisible; Q9LPX2; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 6.
DR TIGRFAMs; TIGR00756; PPR; 14.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..53
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 54..644
FT /note="Pentatricopeptide repeat-containing protein
FT At1g12775, mitochondrial"
FT /id="PRO_0000342780"
FT REPEAT 87..121
FT /note="PPR 1"
FT REPEAT 122..156
FT /note="PPR 2"
FT REPEAT 157..191
FT /note="PPR 3"
FT REPEAT 192..226
FT /note="PPR 4"
FT REPEAT 227..261
FT /note="PPR 5"
FT REPEAT 262..296
FT /note="PPR 6"
FT REPEAT 297..331
FT /note="PPR 7"
FT REPEAT 332..366
FT /note="PPR 8"
FT REPEAT 367..401
FT /note="PPR 9"
FT REPEAT 402..436
FT /note="PPR 10"
FT REPEAT 437..471
FT /note="PPR 11"
FT REPEAT 472..506
FT /note="PPR 12"
FT REPEAT 507..541
FT /note="PPR 13"
FT REPEAT 542..576
FT /note="PPR 14"
FT REPEAT 577..611
FT /note="PPR 15"
SQ SEQUENCE 644 AA; 72325 MW; BF9904CAA631B3D9 CRC64;
MVRMMIRRLS SQASRFVQPR LLETGTLRIA LINCPNELLF CCERGFSTFS DRNLSYRDKL
SSGLVGIKAD DAVDLFRDMI QSRPLPTVID FNRLFSAIAK TKQYELVLAL CKQMESKGIA
HSIYTLSIMI NCFCRCRKLS YAFSTMGKIM KLGYEPDTVI FNTLLNGLCL ECRVSEALEL
VDRMVEMGHK PTLITLNTLV NGLCLNGKVS DAVVLIDRMV ETGFQPNEVT YGPVLNVMCK
SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKDGSLD NAFNLFNEME IKGFKADIIT
YNTLIGGFCN AGRWDDGAKL LRDMIKRKIS PNVVTFSVLI DSFVKEGKLR EADQLLKEMM
QRGIAPNTIT YNSLIDGFCK ENRLEEAIQM VDLMISKGCD PDIMTFNILI NGYCKANRID
DGLELFREMS LRGVIANTVT YNTLVQGFCQ SGKLEVAKKL FQEMVSRRVR PDIVSYKILL
DGLCDNGELE KALEIFGKIE KSKMELDIGI YMIIIHGMCN ASKVDDAWDL FCSLPLKGVK
LDARAYNIMI SELCRKDSLS KADILFRKMT EEGHAPDELT YNILIRAHLG DDDATTAAEL
IEEMKSSGFP ADVSTVKMVI NMLSSGELDK SFLDMLSTTR ASLK
