PPR46_ARATH
ID PPR46_ARATH Reviewed; 608 AA.
AC Q3EDA9;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 93.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g16830;
GN OrderedLocusNames=At1g16830; ORFNames=F17F16.24;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC026237; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002684; AEE29504.1; -; Genomic_DNA.
DR RefSeq; NP_173127.4; NM_101544.5.
DR AlphaFoldDB; Q3EDA9; -.
DR SMR; Q3EDA9; -.
DR STRING; 3702.AT1G16830.1; -.
DR iPTMnet; Q3EDA9; -.
DR PaxDb; Q3EDA9; -.
DR PRIDE; Q3EDA9; -.
DR EnsemblPlants; AT1G16830.1; AT1G16830.1; AT1G16830.
DR GeneID; 838254; -.
DR Gramene; AT1G16830.1; AT1G16830.1; AT1G16830.
DR KEGG; ath:AT1G16830; -.
DR Araport; AT1G16830; -.
DR TAIR; locus:2015671; AT1G16830.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_17_1; -.
DR InParanoid; Q3EDA9; -.
DR OMA; IAVCNLC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q3EDA9; -.
DR PRO; PR:Q3EDA9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q3EDA9; baseline and differential.
DR Genevisible; Q3EDA9; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 13.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..608
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g16830"
FT /id="PRO_0000342787"
FT REPEAT 107..141
FT /note="PPR 1"
FT REPEAT 142..172
FT /note="PPR 2"
FT REPEAT 173..210
FT /note="PPR 3"
FT REPEAT 211..245
FT /note="PPR 4"
FT REPEAT 246..280
FT /note="PPR 5"
FT REPEAT 281..315
FT /note="PPR 6"
FT REPEAT 316..350
FT /note="PPR 7"
FT REPEAT 351..381
FT /note="PPR 8"
FT REPEAT 383..417
FT /note="PPR 9"
FT REPEAT 418..452
FT /note="PPR 10"
FT REPEAT 453..487
FT /note="PPR 11"
FT REPEAT 488..522
FT /note="PPR 12"
FT REPEAT 523..557
FT /note="PPR 13"
SQ SEQUENCE 608 AA; 69669 MW; 27ED0206615DD683 CRC64;
MLWRCNWVKQ RKRILNTLSF SSIHGQYPRE YTAAKPLTHD NVYSCLRESP ADLKTLNFFF
WCAKQNNYFH DDRAFDHMVG VVEKLTREYY SIDRIIERLK ISGCEIKPRV FLLLLEIFWR
GHIYDKAIEV YTGMSSFGFV PNTRAMNMMM DVNFKLNVVN GALEIFEGIR FRNFFSFDIA
LSHFCSRGGR GDLVGVKIVL KRMIGEGFYP NRERFGQILR LCCRTGCVSE AFQVVGLMIC
SGISVSVNVW SMLVSGFFRS GEPQKAVDLF NKMIQIGCSP NLVTYTSLIK GFVDLGMVDE
AFTVLSKVQS EGLAPDIVLC NLMIHTYTRL GRFEEARKVF TSLEKRKLVP DQYTFASILS
SLCLSGKFDL VPRITHGIGT DFDLVTGNLL SNCFSKIGYN SYALKVLSIM SYKDFALDCY
TYTVYLSALC RGGAPRAAIK MYKIIIKEKK HLDAHFHSAI IDSLIELGKY NTAVHLFKRC
ILEKYPLDVV SYTVAIKGLV RAKRIEEAYS LCCDMKEGGI YPNRRTYRTI ISGLCKEKET
EKVRKILREC IQEGVELDPN TKFQVYSLLS RYRGDFSEFR SVFEKWKSEF TENVDVSDSD
DELFVSVG
