PPR4_ARATH
ID PPR4_ARATH Reviewed; 537 AA.
AC Q9FZ24; Q8VYY9;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g02370, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g02370; ORFNames=T6A9.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC064879; AAG00888.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27421.1; -; Genomic_DNA.
DR EMBL; AY065448; AAL38889.1; -; mRNA.
DR PIR; A86154; A86154.
DR RefSeq; NP_171739.1; NM_100118.5.
DR AlphaFoldDB; Q9FZ24; -.
DR SMR; Q9FZ24; -.
DR STRING; 3702.AT1G02370.1; -.
DR SwissPalm; Q9FZ24; -.
DR PaxDb; Q9FZ24; -.
DR PRIDE; Q9FZ24; -.
DR ProteomicsDB; 226492; -.
DR EnsemblPlants; AT1G02370.1; AT1G02370.1; AT1G02370.
DR GeneID; 837735; -.
DR Gramene; AT1G02370.1; AT1G02370.1; AT1G02370.
DR KEGG; ath:AT1G02370; -.
DR Araport; AT1G02370; -.
DR TAIR; locus:2204808; AT1G02370.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_3_0_1; -.
DR InParanoid; Q9FZ24; -.
DR OMA; CELFLEH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FZ24; -.
DR PRO; PR:Q9FZ24; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FZ24; baseline and differential.
DR Genevisible; Q9FZ24; AT.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR SUPFAM; SSF48452; SSF48452; 1.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..18
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 19..537
FT /note="Pentatricopeptide repeat-containing protein
FT At1g02370, mitochondrial"
FT /id="PRO_0000342745"
FT REPEAT 171..205
FT /note="PPR 1"
FT REPEAT 206..240
FT /note="PPR 2"
FT REPEAT 241..275
FT /note="PPR 3"
FT REPEAT 277..307
FT /note="PPR 4"
FT REPEAT 312..346
FT /note="PPR 5"
FT REPEAT 347..377
FT /note="PPR 6"
FT REPEAT 382..416
FT /note="PPR 7"
FT CONFLICT 233
FT /note="M -> I (in Ref. 3; AAL38889)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 537 AA; 60353 MW; DE27DB5C3566D789 CRC64;
MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS
VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT VRKDDLFRCA KTLRKFRRPQ
HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN
CYCVELEEEK AKAHFEIMDE LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP
CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK
LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE EAEKILDGAM KKSKGPFSKA
RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED
FCKILSNWKP LDSETMTFLI KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP
