PPR51_ARATH
ID PPR51_ARATH Reviewed; 316 AA.
AC Q940Z1; F4HP74; Q9LN43;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g19525;
GN OrderedLocusNames=At1g19525; ORFNames=F18O14.27;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 24-316.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79432.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g19520 and At1g19525.; Evidence={ECO:0000305};
CC Sequence=AAK96539.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=AAL31235.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=AEE29863.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g19520 and At1g19525.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC025808; AAF79432.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29863.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AY052347; AAK96539.1; ALT_INIT; mRNA.
DR EMBL; AY061908; AAL31235.1; ALT_INIT; mRNA.
DR PIR; A86328; A86328.
DR RefSeq; NP_564088.2; NM_101809.4.
DR AlphaFoldDB; Q940Z1; -.
DR SMR; Q940Z1; -.
DR BioGRID; 23777; 7.
DR IntAct; Q940Z1; 1.
DR PeptideAtlas; Q940Z1; -.
DR PRIDE; Q940Z1; -.
DR ProteomicsDB; 236590; -.
DR EnsemblPlants; AT1G19520.1; AT1G19520.1; AT1G19520.
DR GeneID; 838538; -.
DR Gramene; AT1G19520.1; AT1G19520.1; AT1G19520.
DR Araport; AT1G19525; -.
DR TAIR; locus:2016402; AT1G19520.
DR HOGENOM; CLU_433038_0_0_1; -.
DR InParanoid; Q940Z1; -.
DR OrthoDB; 1344243at2759; -.
DR PRO; PR:Q940Z1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q940Z1; baseline and differential.
DR Genevisible; Q940Z1; AT.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR044657; NFD5-like.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR46862; PTHR46862; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF17177; PPR_long; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..316
FT /note="Pentatricopeptide repeat-containing protein
FT At1g19525"
FT /id="PRO_0000342792"
FT REPEAT 9..43
FT /note="PPR 1"
FT REPEAT 44..78
FT /note="PPR 2"
FT REPEAT 79..113
FT /note="PPR 3"
FT REPEAT 115..149
FT /note="PPR 4"
FT REPEAT 150..184
FT /note="PPR 5"
FT REPEAT 185..219
FT /note="PPR 6"
SQ SEQUENCE 316 AA; 35253 MW; D0BC1E86E81550C5 CRC64;
MSQNGIFPDI LTATALVHMY SKSGNFERAT EAFENLKSYG LRPDEKIYEA MILGYVNAGK
PKLGERLMKE MQAKELKASE EVYMALLRAY AQMGDANGAA GISSSMQYAS DGPLSFEAYS
LFVEAYGKAG QVDKAKSNFD EMRKLGHKPD DKCIANLVRA YKGENSLDKA LRLLLQLEKD
GIEIGVITYT VLVDWMANLG LIEEAEQLLV KISQLGEAPP FELQVSLCCM YSGVRNEKKT
LQALGVLEAK RDQMGPNEFD KVISALKRGG FEKDARRMYK YMEARKFLPS QRLQMDMVAP
PRAFGSGSGR VRRFNS
