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PPR54_ARATH
ID   PPR54_ARATH             Reviewed;         537 AA.
AC   Q9LN22;
DT   01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   03-AUG-2022, entry version 117.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At1g20300, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At1g20300; ORFNames=F14O10.10;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA   Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA   Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA   Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA   Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA   Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA   Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA   Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA   Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA   Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA   Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA   Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA   Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA   Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL   Nature 408:816-820(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AC026234; AAF88159.1; -; Genomic_DNA.
DR   EMBL; CP002684; AEE29959.1; -; Genomic_DNA.
DR   EMBL; AF446865; AAL38598.1; -; mRNA.
DR   EMBL; AY052274; AAK96467.1; -; mRNA.
DR   PIR; F86336; F86336.
DR   RefSeq; NP_564110.1; NM_101881.3.
DR   AlphaFoldDB; Q9LN22; -.
DR   SMR; Q9LN22; -.
DR   STRING; 3702.AT1G20300.1; -.
DR   PaxDb; Q9LN22; -.
DR   PRIDE; Q9LN22; -.
DR   ProteomicsDB; 234893; -.
DR   EnsemblPlants; AT1G20300.1; AT1G20300.1; AT1G20300.
DR   GeneID; 838618; -.
DR   Gramene; AT1G20300.1; AT1G20300.1; AT1G20300.
DR   KEGG; ath:AT1G20300; -.
DR   Araport; AT1G20300; -.
DR   TAIR; locus:2012883; AT1G20300.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_0_1; -.
DR   InParanoid; Q9LN22; -.
DR   OMA; RYVRAEM; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9LN22; -.
DR   PRO; PR:Q9LN22; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   ExpressionAtlas; Q9LN22; baseline and differential.
DR   Genevisible; Q9LN22; AT.
DR   GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR   Gene3D; 1.25.40.10; -; 4.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 4.
DR   SUPFAM; SSF48452; SSF48452; 1.
DR   TIGRFAMs; TIGR00756; PPR; 9.
DR   PROSITE; PS51375; PPR; 11.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..32
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           33..537
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At1g20300, mitochondrial"
FT                   /id="PRO_0000342795"
FT   REPEAT          150..184
FT                   /note="PPR 1"
FT   REPEAT          185..219
FT                   /note="PPR 2"
FT   REPEAT          220..250
FT                   /note="PPR 3"
FT   REPEAT          254..288
FT                   /note="PPR 4"
FT   REPEAT          289..323
FT                   /note="PPR 5"
FT   REPEAT          324..358
FT                   /note="PPR 6"
FT   REPEAT          359..393
FT                   /note="PPR 7"
FT   REPEAT          394..428
FT                   /note="PPR 8"
FT   REPEAT          429..463
FT                   /note="PPR 9"
FT   REPEAT          464..498
FT                   /note="PPR 10"
FT   REPEAT          500..534
FT                   /note="PPR 11"
SQ   SEQUENCE   537 AA;  61208 MW;  5382B2EB7E6095A0 CRC64;
     MALLRSKLHL SRTLSFISPL LPKTFSTSAT SLLSDHENDE SAATITAAVS VPISPLLTPE
     DTQTVEKFHS IIKDHYRKNP TSPNDAILNP SLTLHALSLD FSQIETSQVS PSVVRCVIEK
     CGSVRHGIPL HQSLAFFNWA TSRDDYDHKS PHPYNEMIDL SGKVRQFDLA WHLIDLMKSR
     NVEISIETFT ILIRRYVRAG LASEAVHCFN RMEDYGCVPD KIAFSIVISN LSRKRRASEA
     QSFFDSLKDR FEPDVIVYTN LVRGWCRAGE ISEAEKVFKE MKLAGIEPNV YTYSIVIDAL
     CRCGQISRAH DVFADMLDSG CAPNAITFNN LMRVHVKAGR TEKVLQVYNQ MKKLGCEPDT
     ITYNFLIEAH CRDENLENAV KVLNTMIKKK CEVNASTFNT IFRYIEKKRD VNGAHRMYSK
     MMEAKCEPNT VTYNILMRMF VGSKSTDMVL KMKKEMDDKE VEPNVNTYRL LVTMFCGMGH
     WNNAYKLFKE MVEEKCLTPS LSLYEMVLAQ LRRAGQLKKH EELVEKMIQK GLVARPL
 
 
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