PPR54_ARATH
ID PPR54_ARATH Reviewed; 537 AA.
AC Q9LN22;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g20300, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g20300; ORFNames=F14O10.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC026234; AAF88159.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29959.1; -; Genomic_DNA.
DR EMBL; AF446865; AAL38598.1; -; mRNA.
DR EMBL; AY052274; AAK96467.1; -; mRNA.
DR PIR; F86336; F86336.
DR RefSeq; NP_564110.1; NM_101881.3.
DR AlphaFoldDB; Q9LN22; -.
DR SMR; Q9LN22; -.
DR STRING; 3702.AT1G20300.1; -.
DR PaxDb; Q9LN22; -.
DR PRIDE; Q9LN22; -.
DR ProteomicsDB; 234893; -.
DR EnsemblPlants; AT1G20300.1; AT1G20300.1; AT1G20300.
DR GeneID; 838618; -.
DR Gramene; AT1G20300.1; AT1G20300.1; AT1G20300.
DR KEGG; ath:AT1G20300; -.
DR Araport; AT1G20300; -.
DR TAIR; locus:2012883; AT1G20300.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9LN22; -.
DR OMA; RYVRAEM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LN22; -.
DR PRO; PR:Q9LN22; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LN22; baseline and differential.
DR Genevisible; Q9LN22; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 9.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..32
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 33..537
FT /note="Pentatricopeptide repeat-containing protein
FT At1g20300, mitochondrial"
FT /id="PRO_0000342795"
FT REPEAT 150..184
FT /note="PPR 1"
FT REPEAT 185..219
FT /note="PPR 2"
FT REPEAT 220..250
FT /note="PPR 3"
FT REPEAT 254..288
FT /note="PPR 4"
FT REPEAT 289..323
FT /note="PPR 5"
FT REPEAT 324..358
FT /note="PPR 6"
FT REPEAT 359..393
FT /note="PPR 7"
FT REPEAT 394..428
FT /note="PPR 8"
FT REPEAT 429..463
FT /note="PPR 9"
FT REPEAT 464..498
FT /note="PPR 10"
FT REPEAT 500..534
FT /note="PPR 11"
SQ SEQUENCE 537 AA; 61208 MW; 5382B2EB7E6095A0 CRC64;
MALLRSKLHL SRTLSFISPL LPKTFSTSAT SLLSDHENDE SAATITAAVS VPISPLLTPE
DTQTVEKFHS IIKDHYRKNP TSPNDAILNP SLTLHALSLD FSQIETSQVS PSVVRCVIEK
CGSVRHGIPL HQSLAFFNWA TSRDDYDHKS PHPYNEMIDL SGKVRQFDLA WHLIDLMKSR
NVEISIETFT ILIRRYVRAG LASEAVHCFN RMEDYGCVPD KIAFSIVISN LSRKRRASEA
QSFFDSLKDR FEPDVIVYTN LVRGWCRAGE ISEAEKVFKE MKLAGIEPNV YTYSIVIDAL
CRCGQISRAH DVFADMLDSG CAPNAITFNN LMRVHVKAGR TEKVLQVYNQ MKKLGCEPDT
ITYNFLIEAH CRDENLENAV KVLNTMIKKK CEVNASTFNT IFRYIEKKRD VNGAHRMYSK
MMEAKCEPNT VTYNILMRMF VGSKSTDMVL KMKKEMDDKE VEPNVNTYRL LVTMFCGMGH
WNNAYKLFKE MVEEKCLTPS LSLYEMVLAQ LRRAGQLKKH EELVEKMIQK GLVARPL
