PPR55_ARATH
ID PPR55_ARATH Reviewed; 703 AA.
AC Q4V389; O23139; O80541; Q67YS4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2005, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g22830;
GN Name=PCMP-E24; OrderedLocusNames=At1g22830; ORFNames=F19G10.21, T22J18.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB72176.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC003979; AAC25504.1; ALT_TERM; Genomic_DNA.
DR EMBL; AF000657; AAB72176.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002684; AEE30292.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30293.1; -; Genomic_DNA.
DR EMBL; AK176394; BAD44157.1; -; mRNA.
DR EMBL; BT023467; AAY56458.1; -; mRNA.
DR PIR; B86362; B86362.
DR PIR; T00762; T00762.
DR RefSeq; NP_001077582.1; NM_001084113.2.
DR RefSeq; NP_173696.1; NM_102129.3.
DR AlphaFoldDB; Q4V389; -.
DR SMR; Q4V389; -.
DR iPTMnet; Q4V389; -.
DR PaxDb; Q4V389; -.
DR PRIDE; Q4V389; -.
DR EnsemblPlants; AT1G22830.1; AT1G22830.1; AT1G22830.
DR EnsemblPlants; AT1G22830.2; AT1G22830.2; AT1G22830.
DR GeneID; 838888; -.
DR Gramene; AT1G22830.1; AT1G22830.1; AT1G22830.
DR Gramene; AT1G22830.2; AT1G22830.2; AT1G22830.
DR KEGG; ath:AT1G22830; -.
DR Araport; AT1G22830; -.
DR TAIR; locus:2017744; AT1G22830.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q4V389; -.
DR OMA; VEMYART; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q4V389; -.
DR PRO; PR:Q4V389; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q4V389; baseline and differential.
DR Genevisible; Q4V389; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..703
FT /note="Pentatricopeptide repeat-containing protein
FT At1g22830"
FT /id="PRO_0000342796"
FT REPEAT 82..116
FT /note="PPR 1"
FT REPEAT 117..147
FT /note="PPR 2"
FT REPEAT 148..182
FT /note="PPR 3"
FT REPEAT 183..217
FT /note="PPR 4"
FT REPEAT 218..248
FT /note="PPR 5"
FT REPEAT 249..283
FT /note="PPR 6"
FT REPEAT 284..318
FT /note="PPR 7"
FT REPEAT 319..353
FT /note="PPR 8"
FT REPEAT 356..386
FT /note="PPR 9"
FT REPEAT 387..421
FT /note="PPR 10"
FT REPEAT 422..452
FT /note="PPR 11"
FT REPEAT 458..488
FT /note="PPR 12"
FT REPEAT 489..523
FT /note="PPR 13"
FT REPEAT 524..554
FT /note="PPR 14"
FT REPEAT 560..594
FT /note="PPR 15"
FT REGION 595..671
FT /note="Type E motif"
FT REGION 671..703
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 679
FT /note="N -> D (in Ref. 3; BAD44157)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 703 AA; 79315 MW; 7CF0C9EBD9DB3810 CRC64;
MPSSPSRSIL RGLTVSEICK FIPQSWKQLP RPISETSKTH DDESVPQVLF NSFRHCISHG
QLYEAFRTFS LLRYQSGSHE FVLYSSASLL STCVGFNEFV PGQQLHAHCI SSGLEFDSVL
VPKLVTFYSA FNLLDEAQTI TENSEILHPL PWNVLIGSYI RNKRFQESVS VYKRMMSKGI
RADEFTYPSV IKACAALLDF AYGRVVHGSI EVSSHRCNLY VCNALISMYK RFGKVDVARR
LFDRMSERDA VSWNAIINCY TSEEKLGEAF KLLDRMYLSG VEASIVTWNT IAGGCLEAGN
YIGALNCVVG MRNCNVRIGS VAMINGLKAC SHIGALKWGK VFHCLVIRSC SFSHDIDNVR
NSLITMYSRC SDLRHAFIVF QQVEANSLST WNSIISGFAY NERSEETSFL LKEMLLSGFH
PNHITLASIL PLFARVGNLQ HGKEFHCYIL RRQSYKDCLI LWNSLVDMYA KSGEIIAAKR
VFDSMRKRDK VTYTSLIDGY GRLGKGEVAL AWFKDMDRSG IKPDHVTMVA VLSACSHSNL
VREGHWLFTK MEHVFGIRLR LEHYSCMVDL YCRAGYLDKA RDIFHTIPYE PSSAMCATLL
KACLIHGNTN IGEWAADKLL LETKPEHLGH YMLLADMYAV TGSWSKLVTV KTLLSDLGVQ
KAHEFALMET DSELDGENNK PMNDDSVINQ EQSSDEERLV EVG
