ID   PPR56_ARATH             Reviewed;         718 AA.
AC   P0C7Q9; O23127;
DT   01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-JUL-2008, sequence version 1.
DT   03-AUG-2022, entry version 85.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At1g22960, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At1g22960; ORFNames=F19G10.9;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA   Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA   Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA   Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA   Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA   Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA   Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA   Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA   Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA   Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA   Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA   Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA   Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA   Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL   Nature 408:816-820(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAB72163.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g22950 and At1g22960.; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AF000657; AAB72163.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002684; AEE30315.1; -; Genomic_DNA.
DR   EMBL; CP002684; ANM57960.1; -; Genomic_DNA.
DR   PIR; F86363; F86363.
DR   RefSeq; NP_001319064.1; NM_001332567.1.
DR   RefSeq; NP_001320434.1; NM_001332568.1.
DR   AlphaFoldDB; P0C7Q9; -.
DR   SMR; P0C7Q9; -.
DR   STRING; 3702.AT1G22960.1; -.
DR   PaxDb; P0C7Q9; -.
DR   PRIDE; P0C7Q9; -.
DR   ProteomicsDB; 236651; -.
DR   EnsemblPlants; AT1G22960.1; AT1G22960.1; AT1G22960.
DR   EnsemblPlants; AT1G22960.2; AT1G22960.2; AT1G22960.
DR   GeneID; 838903; -.
DR   Gramene; AT1G22960.1; AT1G22960.1; AT1G22960.
DR   Gramene; AT1G22960.2; AT1G22960.2; AT1G22960.
DR   KEGG; ath:AT1G22960; -.
DR   Araport; AT1G22960; -.
DR   TAIR; locus:2017754; AT1G22960.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_12_1; -.
DR   InParanoid; P0C7Q9; -.
DR   OMA; RFAYNTR; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; P0C7Q9; -.
DR   PRO; PR:P0C7Q9; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   ExpressionAtlas; P0C7Q9; baseline and differential.
DR   Genevisible; P0C7Q9; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; -; 7.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 6.
DR   TIGRFAMs; TIGR00756; PPR; 12.
DR   PROSITE; PS51375; PPR; 16.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..11
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           12..718
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At1g22960, mitochondrial"
FT                   /id="PRO_0000342797"
FT   REPEAT          167..201
FT                   /note="PPR 1"
FT   REPEAT          202..236
FT                   /note="PPR 2"
FT   REPEAT          237..271
FT                   /note="PPR 3"
FT   REPEAT          272..306
FT                   /note="PPR 4"
FT   REPEAT          307..341
FT                   /note="PPR 5"
FT   REPEAT          342..372
FT                   /note="PPR 6"
FT   REPEAT          373..407
FT                   /note="PPR 7"
FT   REPEAT          408..442
FT                   /note="PPR 8"
FT   REPEAT          443..477
FT                   /note="PPR 9"
FT   REPEAT          478..512
FT                   /note="PPR 10"
FT   REPEAT          514..548
FT                   /note="PPR 11"
FT   REPEAT          549..583
FT                   /note="PPR 12"
FT   REPEAT          584..618
FT                   /note="PPR 13"
FT   REPEAT          619..653
FT                   /note="PPR 14"
FT   REPEAT          654..688
FT                   /note="PPR 15"
SQ   SEQUENCE   718 AA;  82642 MW;  451C6FCC59DEE166 CRC64;
     MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL
     SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE IAFRFFNWIQ RQSDVKQSRQ
     AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK
     KSMAEKFLLS FEKMIRKGFL PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT
     FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
     RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID
     DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL RAGDIHPSIV TYNTLIDGLC
     ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY
     AYTTRAVGEL RLGDSDKAFR LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK
     IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
     LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM
     LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL EKDHESREVE FLERLLLS