PPR57_ARATH
ID PPR57_ARATH Reviewed; 790 AA.
AC Q9FRI5;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g25360;
GN Name=PCMP-H74; OrderedLocusNames=At1g25360; ORFNames=F4F7.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC079374; AAG28801.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30612.1; -; Genomic_DNA.
DR PIR; E86383; E86383.
DR RefSeq; NP_173907.1; NM_102346.2.
DR AlphaFoldDB; Q9FRI5; -.
DR SMR; Q9FRI5; -.
DR STRING; 3702.AT1G25360.1; -.
DR iPTMnet; Q9FRI5; -.
DR PaxDb; Q9FRI5; -.
DR PRIDE; Q9FRI5; -.
DR EnsemblPlants; AT1G25360.1; AT1G25360.1; AT1G25360.
DR GeneID; 839121; -.
DR Gramene; AT1G25360.1; AT1G25360.1; AT1G25360.
DR KEGG; ath:AT1G25360; -.
DR Araport; AT1G25360; -.
DR TAIR; locus:2032955; AT1G25360.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9FRI5; -.
DR OMA; TPSIWEA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FRI5; -.
DR PRO; PR:Q9FRI5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FRI5; baseline and differential.
DR Genevisible; Q9FRI5; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..790
FT /note="Pentatricopeptide repeat-containing protein
FT At1g25360"
FT /id="PRO_0000342798"
FT REPEAT 48..82
FT /note="PPR 1"
FT REPEAT 84..109
FT /note="PPR 2"
FT REPEAT 112..146
FT /note="PPR 3"
FT REPEAT 147..182
FT /note="PPR 4"
FT REPEAT 183..217
FT /note="PPR 5"
FT REPEAT 218..248
FT /note="PPR 6"
FT REPEAT 250..284
FT /note="PPR 7"
FT REPEAT 285..315
FT /note="PPR 8"
FT REPEAT 319..349
FT /note="PPR 9"
FT REPEAT 350..384
FT /note="PPR 10"
FT REPEAT 385..415
FT /note="PPR 11"
FT REPEAT 416..450
FT /note="PPR 12"
FT REPEAT 451..481
FT /note="PPR 13"
FT REPEAT 482..516
FT /note="PPR 14"
FT REPEAT 517..551
FT /note="PPR 15"
FT REPEAT 553..583
FT /note="PPR 16"
FT REGION 588..663
FT /note="Type E motif"
FT REGION 664..694
FT /note="Type E(+) motif"
FT REGION 695..790
FT /note="Type DYW motif"
SQ SEQUENCE 790 AA; 88586 MW; B717DA2CAE4D3C6B CRC64;
MQPNPDLVRA IANRYAANLR LCLPLRRTSL QLARAVHGNI ITFGFQPRAH ILNRLIDVYC
KSSELNYARQ LFDEISEPDK IARTTMVSGY CASGDITLAR GVFEKAPVCM RDTVMYNAMI
TGFSHNNDGY SAINLFCKMK HEGFKPDNFT FASVLAGLAL VADDEKQCVQ FHAAALKSGA
GYITSVSNAL VSVYSKCASS PSLLHSARKV FDEILEKDER SWTTMMTGYV KNGYFDLGEE
LLEGMDDNMK LVAYNAMISG YVNRGFYQEA LEMVRRMVSS GIELDEFTYP SVIRACATAG
LLQLGKQVHA YVLRREDFSF HFDNSLVSLY YKCGKFDEAR AIFEKMPAKD LVSWNALLSG
YVSSGHIGEA KLIFKEMKEK NILSWMIMIS GLAENGFGEE GLKLFSCMKR EGFEPCDYAF
SGAIKSCAVL GAYCNGQQYH AQLLKIGFDS SLSAGNALIT MYAKCGVVEE ARQVFRTMPC
LDSVSWNALI AALGQHGHGA EAVDVYEEML KKGIRPDRIT LLTVLTACSH AGLVDQGRKY
FDSMETVYRI PPGADHYARL IDLLCRSGKF SDAESVIESL PFKPTAEIWE ALLSGCRVHG
NMELGIIAAD KLFGLIPEHD GTYMLLSNMH AATGQWEEVA RVRKLMRDRG VKKEVACSWI
EMETQVHTFL VDDTSHPEAE AVYIYLQDLG KEMRRLGYVP DTSFVLHDVE SDGHKEDMLT
THSEKIAVAF GLMKLPPGTT IRIFKNLRTC GDCHNFFRFL SWVVQRDIIL RDRKRFHHFR
NGECSCGNFW
