PPR59_ARATH
ID PPR59_ARATH Reviewed; 505 AA.
AC Q9FZD4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 99.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g26500;
GN OrderedLocusNames=At1g26500; ORFNames=T1K7.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC013427; AAF98569.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30697.1; -; Genomic_DNA.
DR PIR; G86391; G86391.
DR RefSeq; NP_173972.1; NM_102412.1.
DR AlphaFoldDB; Q9FZD4; -.
DR SMR; Q9FZD4; -.
DR PaxDb; Q9FZD4; -.
DR PRIDE; Q9FZD4; -.
DR EnsemblPlants; AT1G26500.1; AT1G26500.1; AT1G26500.
DR GeneID; 839190; -.
DR Gramene; AT1G26500.1; AT1G26500.1; AT1G26500.
DR KEGG; ath:AT1G26500; -.
DR Araport; AT1G26500; -.
DR TAIR; locus:2197925; AT1G26500.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9FZD4; -.
DR OMA; EFFHLMN; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FZD4; -.
DR PRO; PR:Q9FZD4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FZD4; baseline and differential.
DR Genevisible; Q9FZD4; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 7.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..505
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g26500"
FT /id="PRO_0000342800"
FT REPEAT 145..179
FT /note="PPR 1"
FT REPEAT 180..210
FT /note="PPR 2"
FT REPEAT 214..248
FT /note="PPR 3"
FT REPEAT 249..279
FT /note="PPR 4"
FT REPEAT 285..319
FT /note="PPR 5"
FT REPEAT 320..350
FT /note="PPR 6"
FT REPEAT 351..385
FT /note="PPR 7"
SQ SEQUENCE 505 AA; 58905 MW; 89EA35728EFABE36 CRC64;
MAVAVVTSRR MINIGNSIRR CFILNHRFFS TELTPTTITP INQDHLLRVC TILYQQQNSP
DSRLVSKLSS TKFQLTHEFF LQVCNNFPLS WRPVHRFFLY SQTHHPDFTH TSTTSNKMLA
IIGNSRNMDL FWELAQEIGK RGLVNDKTFR IVLKTLASAR ELKKCVNYFH LMNGFGYLYN
VETMNRGVET LCKEKLVEEA KFVFIKLKEF IKPDEITYRT MIQGFCDVGD LIEAAKLWNL
MMDEGFDVDI EAGKKIMETL LKKNQFDEAS KVFYVMVSKR GGDLDGGFYR VMIDWLCKNG
RIDMARKVFD EMRERGVYVD NLTWASLIYG LLVKRRVVEA YGLVEGVENP DISIYHGLIK
GLVKIKRASE ATEVFRKMIQ RGCEPIMHTY LMLLQGHLGR RGRKGPDPLV NFDTIFVGGM
IKAGKRLETT KYIERTLKRG LEVPRFDYSK FLHYYSNEEG VVMFEEMAKK LREVSLFDLA
DIFQRYGEKM TTRERRRDRD QLLKT