PPR5_ARATH
ID PPR5_ARATH Reviewed; 491 AA.
AC Q9FZ19;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 104.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g02420;
GN OrderedLocusNames=At1g02420; ORFNames=T6A9.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG00894.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC064879; AAG00894.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002684; AEE27428.1; -; Genomic_DNA.
DR PIR; F86154; F86154.
DR RefSeq; NP_171744.1; NM_100123.2.
DR AlphaFoldDB; Q9FZ19; -.
DR SMR; Q9FZ19; -.
DR PaxDb; Q9FZ19; -.
DR PRIDE; Q9FZ19; -.
DR ProteomicsDB; 226466; -.
DR EnsemblPlants; AT1G02420.1; AT1G02420.1; AT1G02420.
DR GeneID; 837779; -.
DR Gramene; AT1G02420.1; AT1G02420.1; AT1G02420.
DR KEGG; ath:AT1G02420; -.
DR Araport; AT1G02420; -.
DR TAIR; locus:2204913; AT1G02420.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9FZ19; -.
DR OMA; HEKVEMA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FZ19; -.
DR PRO; PR:Q9FZ19; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FZ19; baseline and differential.
DR Genevisible; Q9FZ19; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..491
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g02420"
FT /id="PRO_0000342746"
FT REPEAT 179..209
FT /note="PPR 1"
FT REPEAT 210..244
FT /note="PPR 2"
FT REPEAT 245..279
FT /note="PPR 3"
FT REPEAT 280..314
FT /note="PPR 4"
FT REPEAT 315..349
FT /note="PPR 5"
FT REPEAT 350..384
FT /note="PPR 6"
FT REPEAT 385..419
FT /note="PPR 7"
FT REPEAT 420..454
FT /note="PPR 8"
SQ SEQUENCE 491 AA; 56557 MW; 0C135429D7D426C0 CRC64;
MMMILKPLSS HHVSNFRLSV SFLHSVALSD AKVPVEEEGD DAETVFRMIN GSNLQVELKE
SLSSSGIHLS KDLIDRVLKR VRFSHGNPIQ TLEFYRYASA IRGFYHSSFS LDTMLYILGR
NRKFDQIWEL LIETKRKDRS LISPRTMQVV LGRVAKLCSV RQTVESFWKF KRLVPDFFDT
ACFNALLRTL CQEKSMTDAR NVYHSLKHQF QPDLQTFNIL LSGWKSSEEA EAFFEEMKGK
GLKPDVVTYN SLIDVYCKDR EIEKAYKLID KMREEEETPD VITYTTVIGG LGLIGQPDKA
REVLKEMKEY GCYPDVAAYN AAIRNFCIAR RLGDADKLVD EMVKKGLSPN ATTYNLFFRV
LSLANDLGRS WELYVRMLGN ECLPNTQSCM FLIKMFKRHE KVDMAMRLWE DMVVKGFGSY
SLVSDVLLDL LCDLAKVEEA EKCLLEMVEK GHRPSNVSFK RIKLLMELAN KHDEVNNLIQ
KMAIFSTEIP R
