PPR5_ORYSJ
ID PPR5_ORYSJ Reviewed; 495 AA.
AC A3ABE1; A0A0P0VPH4; Q6Z8K6;
DT 25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2017, sequence version 2.
DT 03-AUG-2022, entry version 69.
DE RecName: Full=Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic {ECO:0000305};
DE Flags: Precursor;
GN OrderedLocusNames=Os02g0750400 {ECO:0000312|EMBL:BAS80940.1},
GN LOC_Os02g51480 {ECO:0000305};
GN ORFNames=OsJ_08397 {ECO:0000312|EMBL:EAZ24630.1},
GN P0431B06.14 {ECO:0000312|EMBL:BAD15637.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Involved in the biogenesis of the plastid translation
CC machinery by promoting the splicing of group II introns in
CC chloroplasts. {ECO:0000250|UniProtKB:A7LN87}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD15637.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF10045.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS80940.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004774; BAD15637.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008208; BAF10045.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014958; BAS80940.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000139; EAZ24630.1; -; Genomic_DNA.
DR RefSeq; XP_015627075.1; XM_015771589.1.
DR AlphaFoldDB; A3ABE1; -.
DR SMR; A3ABE1; -.
DR STRING; 4530.OS02T0750400-01; -.
DR PRIDE; A3ABE1; -.
DR GeneID; 4330740; -.
DR KEGG; osa:4330740; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_1302499_0_0_1; -.
DR OrthoDB; 1344243at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR044179; PPR5-like.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR47874; PTHR47874; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Chloroplast; mRNA processing; mRNA splicing; Plastid; Reference proteome;
KW Repeat; Transit peptide; Translation regulation.
FT TRANSIT 1..29
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 30..495
FT /note="Pentatricopeptide repeat-containing protein PPR5
FT homolog, chloroplastic"
FT /id="PRO_0000441903"
FT REPEAT 120..154
FT /note="PPR 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 155..189
FT /note="PPR 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 195..229
FT /note="PPR 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 230..264
FT /note="PPR 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 265..299
FT /note="PPR 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 300..334
FT /note="PPR 6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 335..365
FT /note="PPR 7"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 370..404
FT /note="PPR 8"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 405..439
FT /note="PPR 9"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 455..495
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 458..495
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 495 AA; 55636 MW; E77AA428CA48DECE CRC64;
MLAYPTTSSP WPPRHHGAAA APAARRHMAA AAARGKRRGA GAAAAEGADE AAEAADLVRF
FLRRTSGGKE RLVAVLDRHV KVVRTEHCFL LFEELGRRDG WLQCLEVFRW MQKQRWYVAD
NGIYSKLISV MGRKGQIRMA MWLFSQMRNS GCRPDTSVYN SLIGTHLHSR DKSKALAKAL
GYFEKMKTID RCQPNIVTYN ILLRAFAQAG DTKQLDILFK DLDESPVSPD IYTYNGVMDA
YGKNGMITEM ESVLVRMKSN QCRPDVITFN ILIDSYGRKQ AFDKMEQVFK SLLRSKEKPT
HPTFNSMITN YGKARLREKA ECVLDKMTEM GFKPNYVTQE CLIMMYAYCD CVSRARQIFD
ELVSSQNNVH LSSVNAMLDA YCMNGLPMEA DQLLDSVIKK GAVPSASTYK LLYKAYTKAN
DKKLIQKLLK RMNSQGIVPN KKFFLDALEA FGNTDKKPRT VPSKNSASKP DVESANNSGT
DTSSKPNLSV WQVAA
