PPR60_ARATH
ID PPR60_ARATH Reviewed; 572 AA.
AC Q9ZVG8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g26900, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E54; OrderedLocusNames=At1g26900; ORFNames=T2P11.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC005508; AAD14496.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30756.1; -; Genomic_DNA.
DR PIR; H86395; H86395.
DR RefSeq; NP_174012.1; NM_102454.2.
DR AlphaFoldDB; Q9ZVG8; -.
DR SMR; Q9ZVG8; -.
DR iPTMnet; Q9ZVG8; -.
DR PaxDb; Q9ZVG8; -.
DR PRIDE; Q9ZVG8; -.
DR ProteomicsDB; 236583; -.
DR EnsemblPlants; AT1G26900.1; AT1G26900.1; AT1G26900.
DR GeneID; 838376; -.
DR Gramene; AT1G26900.1; AT1G26900.1; AT1G26900.
DR KEGG; ath:AT1G26900; -.
DR Araport; AT1G26900; -.
DR TAIR; locus:2202790; AT1G26900.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9ZVG8; -.
DR OMA; CHFYCCC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9ZVG8; -.
DR PRO; PR:Q9ZVG8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9ZVG8; baseline and differential.
DR Genevisible; Q9ZVG8; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..117
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 118..572
FT /note="Pentatricopeptide repeat-containing protein
FT At1g26900, mitochondrial"
FT /id="PRO_0000342801"
FT REPEAT 89..123
FT /note="PPR 1"
FT REPEAT 124..158
FT /note="PPR 2"
FT REPEAT 159..189
FT /note="PPR 3"
FT REPEAT 191..225
FT /note="PPR 4"
FT REPEAT 226..260
FT /note="PPR 5"
FT REPEAT 261..291
FT /note="PPR 6"
FT REPEAT 292..326
FT /note="PPR 7"
FT REPEAT 327..361
FT /note="PPR 8"
FT REPEAT 362..392
FT /note="PPR 9"
FT REPEAT 393..427
FT /note="PPR 10"
FT REPEAT 430..460
FT /note="PPR 11"
FT REPEAT 466..496
FT /note="PPR 12"
FT REGION 501..572
FT /note="Type E motif"
SQ SEQUENCE 572 AA; 63587 MW; 9B40905518E928FE CRC64;
MTLAITSRLR RNFVFRRRNL ESLLSPQCQK LINDLRSCRD TVEVSRIHGY MVKTGLDKDD
FAVSKLLAFS SVLDIRYASS IFEHVSNTNL FMFNTMIRGY SISDEPERAF SVFNQLRAKG
LTLDRFSFIT TLKSCSRELC VSIGEGLHGI ALRSGFMVFT DLRNALIHFY CVCGKISDAR
KVFDEMPQSV DAVTFSTLMN GYLQVSKKAL ALDLFRIMRK SEVVVNVSTL LSFLSAISDL
GDLSGAESAH VLCIKIGLDL DLHLITALIG MYGKTGGISS ARRIFDCAIR KDVVTWNCMI
DQYAKTGLLE ECVWLLRQMK YEKMKPNSST FVGLLSSCAY SEAAFVGRTV ADLLEEERIA
LDAILGTALV DMYAKVGLLE KAVEIFNRMK DKDVKSWTAM ISGYGAHGLA REAVTLFNKM
EEENCKVRPN EITFLVVLNA CSHGGLVMEG IRCFKRMVEA YSFTPKVEHY GCVVDLLGRA
GQLEEAYELI RNLPITSDST AWRALLAACR VYGNADLGES VMMRLAEMGE THPADAILLA
GTHAVAGNPE KSLDNELNKG RKEAGYSAIE IE
