PPR61_ARATH
ID PPR61_ARATH Reviewed; 566 AA.
AC Q9C7F1; F4HUV3;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 03-AUG-2022, entry version 104.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g28020;
GN OrderedLocusNames=At1g28020; ORFNames=F13K9.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG51479.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC069471; AAG51479.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR PIR; G86405; G86405.
DR AlphaFoldDB; Q9C7F1; -.
DR SMR; Q9C7F1; -.
DR PaxDb; Q9C7F1; -.
DR PRIDE; Q9C7F1; -.
DR EnsemblPlants; AT1G28020.1; AT1G28020.1; AT1G28020.
DR Gramene; AT1G28020.1; AT1G28020.1; AT1G28020.
DR Araport; AT1G28020; -.
DR TAIR; locus:2010459; AT1G28020.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_031004_0_0_1; -.
DR InParanoid; Q9C7F1; -.
DR OrthoDB; 670116at2759; -.
DR PhylomeDB; Q9C7F1; -.
DR PRO; PR:Q9C7F1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 8.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..566
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g28020"
FT /id="PRO_0000342802"
FT REPEAT 136..171
FT /note="PPR 1"
FT REPEAT 172..206
FT /note="PPR 2"
FT REPEAT 207..242
FT /note="PPR 3"
FT REPEAT 243..273
FT /note="PPR 4"
FT REPEAT 279..309
FT /note="PPR 5"
FT REPEAT 314..348
FT /note="PPR 6"
FT REPEAT 349..385
FT /note="PPR 7"
FT REPEAT 468..504
FT /note="PPR 8"
FT REPEAT 505..540
FT /note="PPR 9"
SQ SEQUENCE 566 AA; 65309 MW; 157E7EDEE3E9F5A1 CRC64;
MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR
QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC NLIPEDFAAR LHLIENVVGL
EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM
SLYSALKNRE KVEELLLEMK DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI
KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY
RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP SDLKCLIKNL RDSKQFSKAL
QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA
KSDKNLGNMV DEILREMEEN NVDPDLITVN HVLKVYAAES KIQAMEMFMR RWGTEDGIKL
ERGTMIAMAK AYVKAGLTKK SGRGVW
