PPR62_ARATH
ID PPR62_ARATH Reviewed; 520 AA.
AC Q1PFQ9; A0ME98; Q9SHQ3;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 88.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g28690, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E34; OrderedLocusNames=At1g28690; ORFNames=F1K23.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF24543.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g28690 and At1g28695.; Evidence={ECO:0000305};
CC Sequence=ABK28420.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007508; AAF24543.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE31014.1; -; Genomic_DNA.
DR EMBL; DQ446304; ABE65668.1; -; mRNA.
DR EMBL; DQ652867; ABK28420.1; ALT_SEQ; mRNA.
DR RefSeq; NP_174190.2; NM_102636.2.
DR AlphaFoldDB; Q1PFQ9; -.
DR SMR; Q1PFQ9; -.
DR STRING; 3702.AT1G28690.1; -.
DR CAZy; GT77; Glycosyltransferase Family 77.
DR iPTMnet; Q1PFQ9; -.
DR PaxDb; Q1PFQ9; -.
DR PRIDE; Q1PFQ9; -.
DR ProteomicsDB; 234895; -.
DR EnsemblPlants; AT1G28690.1; AT1G28690.1; AT1G28690.
DR GeneID; 839769; -.
DR Gramene; AT1G28690.1; AT1G28690.1; AT1G28690.
DR KEGG; ath:AT1G28690; -.
DR Araport; AT1G28690; -.
DR TAIR; locus:2018668; AT1G28690.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; Q1PFQ9; -.
DR OMA; KDTACSW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q1PFQ9; -.
DR PRO; PR:Q1PFQ9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q1PFQ9; baseline and differential.
DR Genevisible; Q1PFQ9; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..19
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 20..520
FT /note="Pentatricopeptide repeat-containing protein
FT At1g28690, mitochondrial"
FT /id="PRO_0000342803"
FT REPEAT 68..98
FT /note="PPR 1"
FT REPEAT 99..133
FT /note="PPR 2"
FT REPEAT 134..168
FT /note="PPR 3"
FT REPEAT 174..208
FT /note="PPR 4"
FT REPEAT 209..235
FT /note="PPR 5"
FT REPEAT 236..271
FT /note="PPR 6"
FT REPEAT 272..306
FT /note="PPR 7"
FT REPEAT 307..337
FT /note="PPR 8"
FT REPEAT 338..372
FT /note="PPR 9"
FT REPEAT 373..403
FT /note="PPR 10"
FT REPEAT 409..439
FT /note="PPR 11"
FT REGION 444..520
FT /note="Type E motif"
FT CONFLICT 284
FT /note="S -> A (in Ref. 3; ABE65668)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 520 AA; 58138 MW; 195C7A2DC70641C3 CRC64;
MRIFRFTSIS PRILPSNHYS TFPLKQNVSS LSPAKYIAGA LQEHINSPAP KAGKKIHADI
IKTGFQPDLN ISIKLLILHL KCGCLSYARQ VFDELPKPTL SAYNYMISGY LKHGLVKELL
LLVQRMSYSG EKADGYTLSM VLKASNSRGS TMILPRSLCR LVHARIIKCD VELDDVLITA
LVDTYVKSGK LESARTVFET MKDENVVCCT SMISGYMNQG FVEDAEEIFN TTKVKDIVVY
NAMVEGFSRS GETAKRSVDM YISMQRAGFH PNISTFASVI GACSVLTSHE VGQQVHAQIM
KSGVYTHIKM GSSLLDMYAK CGGINDARRV FDQMQEKNVF SWTSMIDGYG KNGNPEEALE
LFTRMKEFRI EPNYVTFLGA LSACSHSGLV DKGYEIFESM QRDYSMKPKM EHYACIVDLM
GRAGDLNKAF EFARAMPERP DSDIWAALLS SCNLHGNVEL ASIAASELFK LNADKRPGAY
LALSNVYASN DKWDNVSKIR EVMKRRRISK TIGRSWTSED
