PPR63_ARATH
ID PPR63_ARATH Reviewed; 475 AA.
AC Q9C6G2; Q9C7N1;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g29710, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H67; OrderedLocusNames=At1g29710; ORFNames=F15D2.39, T3M22.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC068667; AAG51730.1; -; Genomic_DNA.
DR EMBL; AC079288; AAG50776.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31120.1; -; Genomic_DNA.
DR PIR; E86420; E86420.
DR RefSeq; NP_174264.1; NM_102711.2.
DR AlphaFoldDB; Q9C6G2; -.
DR SMR; Q9C6G2; -.
DR STRING; 3702.AT1G29710.1; -.
DR PaxDb; Q9C6G2; -.
DR PRIDE; Q9C6G2; -.
DR ProteomicsDB; 225979; -.
DR EnsemblPlants; AT1G29710.1; AT1G29710.1; AT1G29710.
DR GeneID; 839848; -.
DR Gramene; AT1G29710.1; AT1G29710.1; AT1G29710.
DR KEGG; ath:AT1G29710; -.
DR Araport; AT1G29710; -.
DR TAIR; locus:2013738; AT1G29710.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_1_1; -.
DR InParanoid; Q9C6G2; -.
DR OMA; VHECIIA; -.
DR OrthoDB; 808695at2759; -.
DR PhylomeDB; Q9C6G2; -.
DR PRO; PR:Q9C6G2; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C6G2; baseline and differential.
DR Genevisible; Q9C6G2; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 1.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 2.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..37
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 38..475
FT /note="Pentatricopeptide repeat-containing protein
FT At1g29710, mitochondrial"
FT /id="PRO_0000342804"
FT REPEAT 83..117
FT /note="PPR 1"
FT REPEAT 118..148
FT /note="PPR 2"
FT REPEAT 153..183
FT /note="PPR 3"
FT REPEAT 184..218
FT /note="PPR 4"
FT REPEAT 219..254
FT /note="PPR 5"
FT REPEAT 255..285
FT /note="PPR 6"
FT REGION 350..380
FT /note="Type E(+) motif"
FT REGION 381..475
FT /note="Type DYW motif"
SQ SEQUENCE 475 AA; 53813 MW; BA724378558E6C74 CRC64;
MVRLWCGKLR LWKPYLALAT QSRNSWFCSG GGAPSHHLHI LKKYGSSEIT EMINRYKRNV
AGHTLTQNSM VGQYKTTVSP SVAQNVTIET FDSLCIQGNW REAVEVLDYL ENKGYAMDLI
RLLGLAKLCG KPEALEAARV VHECIIALVS PCDVGARNAI IEMYSGCCSV DDALKVFEEM
PEWNSGTLCV MMRCFVNNGY GEEAIDLFTR FKEEGNKPNG EIFNQVFSTC TLTGDVKEGS
LQFQAMYREY GIVPSMEHYH SVTKMLATSG HLDEALNFVE RMPMEPSVDV WETLMNLSRV
HGDVELGDRC AELVEKLDAT RLDKVSSAGL VATKASDFVK KEPSTRSEPY FYSTFRPVDS
SHPQMNIIYE TLMSLRSQLK EMGYVPDTRY YRSLIMAMEN KEQIFGYREE IAVVESLLKS
KPRSAITLLT NIRIVGDCHD MMKLMSVITG RDMIKRDAKI YHLFKNGVCR CNNLW
