PPR65_ARATH
ID PPR65_ARATH Reviewed; 570 AA.
AC Q9C866;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g31430;
GN Name=PCMP-E55; OrderedLocusNames=At1g31430; ORFNames=T8E3.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC027135; AAG51260.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31355.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60002.1; -; Genomic_DNA.
DR PIR; C86440; C86440.
DR RefSeq; NP_001319122.1; NM_001332963.1.
DR RefSeq; NP_174428.1; NM_102882.2.
DR AlphaFoldDB; Q9C866; -.
DR SMR; Q9C866; -.
DR PaxDb; Q9C866; -.
DR PRIDE; Q9C866; -.
DR ProteomicsDB; 226490; -.
DR EnsemblPlants; AT1G31430.1; AT1G31430.1; AT1G31430.
DR EnsemblPlants; AT1G31430.2; AT1G31430.2; AT1G31430.
DR GeneID; 840033; -.
DR Gramene; AT1G31430.1; AT1G31430.1; AT1G31430.
DR Gramene; AT1G31430.2; AT1G31430.2; AT1G31430.
DR KEGG; ath:AT1G31430; -.
DR Araport; AT1G31430; -.
DR TAIR; locus:2206164; AT1G31430.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9C866; -.
DR OMA; TEFEMSV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9C866; -.
DR PRO; PR:Q9C866; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C866; baseline and differential.
DR Genevisible; Q9C866; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..570
FT /note="Pentatricopeptide repeat-containing protein
FT At1g31430"
FT /id="PRO_0000342806"
FT REPEAT 10..44
FT /note="PPR 1"
FT REPEAT 45..79
FT /note="PPR 2"
FT REPEAT 80..110
FT /note="PPR 3"
FT REPEAT 111..141
FT /note="PPR 4"
FT REPEAT 147..177
FT /note="PPR 5"
FT REPEAT 181..215
FT /note="PPR 6"
FT REPEAT 216..242
FT /note="PPR 7"
FT REPEAT 243..277
FT /note="PPR 8"
FT REPEAT 278..312
FT /note="PPR 9"
FT REPEAT 313..343
FT /note="PPR 10"
FT REPEAT 344..378
FT /note="PPR 11"
FT REPEAT 379..414
FT /note="PPR 12"
FT REPEAT 415..449
FT /note="PPR 13"
FT REGION 453..528
FT /note="Type E motif"
FT REGION 529..561
FT /note="Type E(+) motif"
SQ SEQUENCE 570 AA; 63760 MW; D4F614BA21680CD9 CRC64;
MNMSLLQTPS LLMYNKMLKS LADGKSFTKV LALFGELRGQ GLYPDNFTLP VVLKSIGRLR
KVIEGEKVHG YAVKAGLEFD SYVSNSLMGM YASLGKIEIT HKVFDEMPQR DVVSWNGLIS
SYVGNGRFED AIGVFKRMSQ ESNLKFDEGT IVSTLSACSA LKNLEIGERI YRFVVTEFEM
SVRIGNALVD MFCKCGCLDK ARAVFDSMRD KNVKCWTSMV FGYVSTGRID EARVLFERSP
VKDVVLWTAM MNGYVQFNRF DEALELFRCM QTAGIRPDNF VLVSLLTGCA QTGALEQGKW
IHGYINENRV TVDKVVGTAL VDMYAKCGCI ETALEVFYEI KERDTASWTS LIYGLAMNGM
SGRALDLYYE MENVGVRLDA ITFVAVLTAC NHGGFVAEGR KIFHSMTERH NVQPKSEHCS
CLIDLLCRAG LLDEAEELID KMRGESDETL VPVYCSLLSA ARNYGNVKIA ERVAEKLEKV
EVSDSSAHTL LASVYASANR WEDVTNVRRK MKDLGIRKFP GCSSIEIDGV GHEFIVGDDL
LSHPKMDEIN SMLHQTTNLM LDLEHKEIDS
