PPR66_ARATH
ID PPR66_ARATH Reviewed; 409 AA.
AC Q9C6R9;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 107.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g31790;
GN Name=PCMP-A1; OrderedLocusNames=At1g31790; ORFNames=F5M6.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-A subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC079041; AAG50719.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31393.1; -; Genomic_DNA.
DR EMBL; BT026440; ABH04547.1; -; mRNA.
DR PIR; E86441; E86441.
DR RefSeq; NP_174459.1; NM_102913.3.
DR AlphaFoldDB; Q9C6R9; -.
DR SMR; Q9C6R9; -.
DR iPTMnet; Q9C6R9; -.
DR PaxDb; Q9C6R9; -.
DR PRIDE; Q9C6R9; -.
DR EnsemblPlants; AT1G31790.1; AT1G31790.1; AT1G31790.
DR GeneID; 840066; -.
DR Gramene; AT1G31790.1; AT1G31790.1; AT1G31790.
DR KEGG; ath:AT1G31790; -.
DR Araport; AT1G31790; -.
DR TAIR; locus:2034491; AT1G31790.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_3_1; -.
DR InParanoid; Q9C6R9; -.
DR OMA; SDGCFHH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9C6R9; -.
DR PRO; PR:Q9C6R9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C6R9; baseline and differential.
DR Genevisible; Q9C6R9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 2.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..409
FT /note="Pentatricopeptide repeat-containing protein
FT At1g31790"
FT /id="PRO_0000342807"
FT REPEAT 87..121
FT /note="PPR 1"
FT REPEAT 122..152
FT /note="PPR 2"
FT REPEAT 153..187
FT /note="PPR 3"
FT REPEAT 192..226
FT /note="PPR 4"
FT REPEAT 229..259
FT /note="PPR 5"
FT REPEAT 260..294
FT /note="PPR 6"
FT REPEAT 295..330
FT /note="PPR 7"
FT REPEAT 331..361
FT /note="PPR 8"
FT REPEAT 363..397
FT /note="PPR 9"
SQ SEQUENCE 409 AA; 46254 MW; 4A1E1F51C40D36BE CRC64;
MKTLELALPP SPPSLVPSFN YNSTARSVGN DVRTNFDVQL FLRKPKHQKS EPVVVIQQPQ
IQPQNPSSRC STSDILRLMD SLSLPGNEDI YSCLAKESAR ENDQRGAHEL QVHIMKSSIR
PTITFINRLL LMHVSCGRLD ITRQMFDRMP HRDFHSWAIV FLGCIEMGDY EDAAFLFVSM
LKHSQKGAFK IPSWILGCVL KACAMIRDFE LGKQVHALCH KLGFIDEEDS YLSGSLIRFY
GEFRCLEDAN LVLHQLSNAN TVAWAAKVTN DYREGEFQEV IRDFIEMGNH GIKKNVSVFS
NVLKACSWVS DGGRSGQQVH ANAIKLGFES DCLIRCRLIE MYGKYGKVKD AEKVFKSSKD
ETSVSCWNAM VASYMQNGIY IEAIKLLYQM KATGIKAHDT LLNEAHLQM
