PPR67_ARATH
ID PPR67_ARATH Reviewed; 840 AA.
AC Q9C6S6; F4IAZ0;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-NOV-2011, sequence version 2.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g31840;
GN OrderedLocusNames=At1g31840; ORFNames=F5M6.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9C6S6-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG50731.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC079041; AAG50731.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE31403.1; -; Genomic_DNA.
DR PIR; E86442; E86442.
DR RefSeq; NP_174467.4; NM_102921.5. [Q9C6S6-1]
DR AlphaFoldDB; Q9C6S6; -.
DR SMR; Q9C6S6; -.
DR iPTMnet; Q9C6S6; -.
DR PaxDb; Q9C6S6; -.
DR PRIDE; Q9C6S6; -.
DR ProteomicsDB; 226162; -. [Q9C6S6-1]
DR EnsemblPlants; AT1G31840.1; AT1G31840.1; AT1G31840. [Q9C6S6-1]
DR GeneID; 840074; -.
DR Gramene; AT1G31840.1; AT1G31840.1; AT1G31840. [Q9C6S6-1]
DR KEGG; ath:AT1G31840; -.
DR Araport; AT1G31840; -.
DR TAIR; locus:2034528; AT1G31840.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9C6S6; -.
DR OMA; CKRGLME; -.
DR OrthoDB; 1344243at2759; -.
DR PRO; PR:Q9C6S6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C6S6; baseline and differential.
DR Genevisible; Q9C6S6; AT.
DR Gene3D; 1.25.40.10; -; 8.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 6.
DR TIGRFAMs; TIGR00756; PPR; 15.
DR PROSITE; PS51375; PPR; 19.
PE 3: Inferred from homology;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..840
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g31840"
FT /id="PRO_0000342808"
FT REPEAT 98..128
FT /note="PPR 1"
FT REPEAT 145..179
FT /note="PPR 2"
FT REPEAT 180..214
FT /note="PPR 3"
FT REPEAT 216..250
FT /note="PPR 4"
FT REPEAT 251..284
FT /note="PPR 5"
FT REPEAT 285..319
FT /note="PPR 6"
FT REPEAT 320..354
FT /note="PPR 7"
FT REPEAT 355..389
FT /note="PPR 8"
FT REPEAT 390..424
FT /note="PPR 9"
FT REPEAT 425..459
FT /note="PPR 10"
FT REPEAT 460..494
FT /note="PPR 11"
FT REPEAT 495..529
FT /note="PPR 12"
FT REPEAT 530..564
FT /note="PPR 13"
FT REPEAT 565..599
FT /note="PPR 14"
FT REPEAT 600..634
FT /note="PPR 15"
FT REPEAT 635..669
FT /note="PPR 16"
FT REPEAT 670..704
FT /note="PPR 17"
FT REPEAT 705..739
FT /note="PPR 18"
FT REPEAT 740..774
FT /note="PPR 19"
FT REPEAT 775..809
FT /note="PPR 20"
SQ SEQUENCE 840 AA; 94166 MW; C152BB17FEE4AAC5 CRC64;
MLLFSSSSLQ LREIFFPRIF SVFVKLNFLN SRGFSSDSAK ALAAGISKAI KEGNFNLLDS
SVYGSNLQRN ETNLVLLSLE SEPNSALKYF RWAEISGKDP SFYTIAHVLI RNGMFDVADK
VFDEMITNRG KDFNVLGSIR DRSLDADVCK FLMECCCRYG MVDKALEIFV YSTQLGVVIP
QDSVYRMLNS LIGSDRVDLI ADHFDKLCRG GIEPSGVSAH GFVLDALFCK GEVTKALDFH
RLVMERGFRV GIVSCNKVLK GLSVDQIEVA SRLLSLVLDC GPAPNVVTFC TLINGFCKRG
EMDRAFDLFK VMEQRGIEPD LIAYSTLIDG YFKAGMLGMG HKLFSQALHK GVKLDVVVFS
STIDVYVKSG DLATASVVYK RMLCQGISPN VVTYTILIKG LCQDGRIYEA FGMYGQILKR
GMEPSIVTYS SLIDGFCKCG NLRSGFALYE DMIKMGYPPD VVIYGVLVDG LSKQGLMLHA
MRFSVKMLGQ SIRLNVVVFN SLIDGWCRLN RFDEALKVFR LMGIYGIKPD VATFTTVMRV
SIMEGRLEEA LFLFFRMFKM GLEPDALAYC TLIDAFCKHM KPTIGLQLFD LMQRNKISAD
IAVCNVVIHL LFKCHRIEDA SKFFNNLIEG KMEPDIVTYN TMICGYCSLR RLDEAERIFE
LLKVTPFGPN TVTLTILIHV LCKNNDMDGA IRMFSIMAEK GSKPNAVTYG CLMDWFSKSV
DIEGSFKLFE EMQEKGISPS IVSYSIIIDG LCKRGRVDEA TNIFHQAIDA KLLPDVVAYA
ILIRGYCKVG RLVEAALLYE HMLRNGVKPD DLLQRALSEY NPPKWLMSKG VWVHDKPMPD
