PPR69_ARATH
ID PPR69_ARATH Reviewed; 761 AA.
AC P0C7R0; Q9LQL7;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g32415, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E56; OrderedLocusNames=At1g32415; ORFNames=F5D14.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF81338.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g32410 and At1g32415.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007767; AAF81338.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE31484.1; -; Genomic_DNA.
DR PIR; B86449; B86449.
DR RefSeq; NP_564401.1; NM_102976.2.
DR AlphaFoldDB; P0C7R0; -.
DR SMR; P0C7R0; -.
DR PaxDb; P0C7R0; -.
DR PRIDE; P0C7R0; -.
DR ProteomicsDB; 236654; -.
DR EnsemblPlants; AT1G32415.1; AT1G32415.1; AT1G32415.
DR GeneID; 840135; -.
DR Gramene; AT1G32415.1; AT1G32415.1; AT1G32415.
DR KEGG; ath:AT1G32415; -.
DR Araport; AT1G32415; -.
DR TAIR; locus:505006163; AT1G32415.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; P0C7R0; -.
DR OMA; QSCNSMI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; P0C7R0; -.
DR PRO; PR:P0C7R0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; P0C7R0; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IGI:TAIR.
DR GO; GO:1905392; P:plant organ morphogenesis; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 9.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..28
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 29..761
FT /note="Pentatricopeptide repeat-containing protein
FT At1g32415, mitochondrial"
FT /id="PRO_0000342810"
FT REPEAT 76..110
FT /note="PPR 1"
FT REPEAT 111..136
FT /note="PPR 2"
FT REPEAT 137..171
FT /note="PPR 3"
FT REPEAT 172..198
FT /note="PPR 4"
FT REPEAT 199..229
FT /note="PPR 5"
FT REPEAT 230..264
FT /note="PPR 6"
FT REPEAT 265..291
FT /note="PPR 7"
FT REPEAT 298..334
FT /note="PPR 8"
FT REPEAT 338..364
FT /note="PPR 9"
FT REPEAT 367..397
FT /note="PPR 10"
FT REPEAT 399..429
FT /note="PPR 11"
FT REPEAT 430..464
FT /note="PPR 12"
FT REPEAT 465..495
FT /note="PPR 13"
FT REPEAT 502..532
FT /note="PPR 14"
FT REPEAT 533..567
FT /note="PPR 15"
FT REPEAT 568..598
FT /note="PPR 16"
FT REPEAT 604..634
FT /note="PPR 17"
FT REGION 639..718
FT /note="Type E motif"
FT REGION 719..749
FT /note="Type E(+) motif"
SQ SEQUENCE 761 AA; 85017 MW; 3C3CAD249503F823 CRC64;
MRALCVKKVC GFLSKLSLRS SISCRRYYGD KIPNYGSYRR GFSNEEALIL RRLSEGGLVH
ARHLLDKIPQ RGSINRVVYW TSLLSKYAKT GYLDEARVLF EVMPERNIVT CNAMLTGYVK
CRRMNEAWTL FREMPKNVVS WTVMLTALCD DGRSEDAVEL FDEMPERNVV SWNTLVTGLI
RNGDMEKAKQ VFDAMPSRDV VSWNAMIKGY IENDGMEEAK LLFGDMSEKN VVTWTSMVYG
YCRYGDVREA YRLFCEMPER NIVSWTAMIS GFAWNELYRE ALMLFLEMKK DVDAVSPNGE
TLISLAYACG GLGVEFRRLG EQLHAQVISN GWETVDHDGR LAKSLVHMYA SSGLIASAQS
LLNESFDLQS CNIIINRYLK NGDLERAETL FERVKSLHDK VSWTSMIDGY LEAGDVSRAF
GLFQKLHDKD GVTWTVMISG LVQNELFAEA ASLLSDMVRC GLKPLNSTYS VLLSSAGATS
NLDQGKHIHC VIAKTTACYD PDLILQNSLV SMYAKCGAIE DAYEIFAKMV QKDTVSWNSM
IMGLSHHGLA DKALNLFKEM LDSGKKPNSV TFLGVLSACS HSGLITRGLE LFKAMKETYS
IQPGIDHYIS MIDLLGRAGK LKEAEEFISA LPFTPDHTVY GALLGLCGLN WRDKDAEGIA
ERAAMRLLEL DPVNAPGHVA LCNVYAGLGR HDMEKEMRKE MGIKGVKKTP GCSWVVVNGR
ANVFLSGDKS ASEAAQMVLP IFCGNEMLEE EEEKPLSLCH C
