PPR70_ARATH
ID PPR70_ARATH Reviewed; 538 AA.
AC Q9C501; Q8GX76;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g33350;
GN Name=PCMP-E57; OrderedLocusNames=At1g33350; ORFNames=F10C21.4, T16O9.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 313-538.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 313-538.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 320-538.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC43004.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC027035; AAG51281.1; -; Genomic_DNA.
DR EMBL; AC051630; AAG51215.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31586.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM61056.1; -; Genomic_DNA.
DR EMBL; AK118395; BAC43004.1; ALT_INIT; mRNA.
DR EMBL; AK222040; BAD94775.1; -; mRNA.
DR EMBL; BT005240; AAO63304.1; -; mRNA.
DR PIR; C86457; C86457.
DR RefSeq; NP_001323298.1; NM_001333038.1.
DR RefSeq; NP_174603.1; NM_103062.2.
DR AlphaFoldDB; Q9C501; -.
DR SMR; Q9C501; -.
DR STRING; 3702.AT1G33350.1; -.
DR PaxDb; Q9C501; -.
DR PRIDE; Q9C501; -.
DR ProteomicsDB; 226163; -.
DR EnsemblPlants; AT1G33350.1; AT1G33350.1; AT1G33350.
DR EnsemblPlants; AT1G33350.2; AT1G33350.2; AT1G33350.
DR GeneID; 840229; -.
DR Gramene; AT1G33350.1; AT1G33350.1; AT1G33350.
DR Gramene; AT1G33350.2; AT1G33350.2; AT1G33350.
DR KEGG; ath:AT1G33350; -.
DR Araport; AT1G33350; -.
DR TAIR; locus:2006927; AT1G33350.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9C501; -.
DR OMA; RKTHRFY; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9C501; -.
DR PRO; PR:Q9C501; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C501; baseline and differential.
DR Genevisible; Q9C501; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..538
FT /note="Pentatricopeptide repeat-containing protein
FT At1g33350"
FT /id="PRO_0000342811"
FT REPEAT 87..123
FT /note="PPR 1"
FT REPEAT 125..159
FT /note="PPR 2"
FT REPEAT 160..191
FT /note="PPR 3"
FT REPEAT 192..226
FT /note="PPR 4"
FT REPEAT 227..253
FT /note="PPR 5"
FT REPEAT 259..293
FT /note="PPR 6"
FT REPEAT 294..324
FT /note="PPR 7"
FT REPEAT 325..359
FT /note="PPR 8"
FT REPEAT 363..398
FT /note="PPR 9"
FT REPEAT 399..433
FT /note="PPR 10"
FT REGION 434..509
FT /note="Type E motif"
FT CONFLICT 316
FT /note="S -> Y (in Ref. 3; BAC43004 and 4; BAD94775)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 538 AA; 60474 MW; E33B8210FE50B5AB CRC64;
MGTRVTQFSY LHAPSSHMAE QLLNQFISAV ISKSRHLNHL KQVQSFMIVS GLSHSHFLCF
KLLRFCTLRL CNLSYARFIF DRFSFPNTHL YAAVLTAYSS SLPLHASSAF SFFRLMVNRS
VPRPNHFIYP LVLKSTPYLS SAFSTPLVHT HLFKSGFHLY VVVQTALLHS YASSVSHITL
ARQLFDEMSE RNVVSWTAML SGYARSGDIS NAVALFEDMP ERDVPSWNAI LAACTQNGLF
LEAVSLFRRM INEPSIRPNE VTVVCVLSAC AQTGTLQLAK GIHAFAYRRD LSSDVFVSNS
LVDLYGKCGN LEEASSVFKM ASKKSLTAWN SMINCFALHG RSEEAIAVFE EMMKLNINDI
KPDHITFIGL LNACTHGGLV SKGRGYFDLM TNRFGIEPRI EHYGCLIDLL GRAGRFDEAL
EVMSTMKMKA DEAIWGSLLN ACKIHGHLDL AEVAVKNLVA LNPNNGGYVA MMANLYGEMG
NWEEARRARK MIKHQNAYKP PGWSRIEIDN EVHQFYSLDK SHPETEEIYM ILDSLISF
