PPR71_ARATH
ID PPR71_ARATH Reviewed; 581 AA.
AC Q9FX24;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g34160;
GN Name=PCMP-H68; OrderedLocusNames=At1g34160; ORFNames=F12G12.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG12522.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC015446; AAG12522.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE31678.1; -; Genomic_DNA.
DR PIR; G86465; G86465.
DR RefSeq; NP_174678.2; NM_103139.3.
DR AlphaFoldDB; Q9FX24; -.
DR SMR; Q9FX24; -.
DR STRING; 3702.AT1G34160.1; -.
DR PaxDb; Q9FX24; -.
DR PRIDE; Q9FX24; -.
DR ProteomicsDB; 226164; -.
DR EnsemblPlants; AT1G34160.1; AT1G34160.1; AT1G34160.
DR GeneID; 840315; -.
DR Gramene; AT1G34160.1; AT1G34160.1; AT1G34160.
DR KEGG; ath:AT1G34160; -.
DR Araport; AT1G34160; -.
DR TAIR; locus:2009006; AT1G34160.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9FX24; -.
DR OMA; NMKHYGT; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FX24; -.
DR PRO; PR:Q9FX24; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FX24; baseline and differential.
DR Genevisible; Q9FX24; AT.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..581
FT /note="Pentatricopeptide repeat-containing protein
FT At1g34160"
FT /id="PRO_0000342812"
FT REPEAT 67..101
FT /note="PPR 1"
FT REPEAT 108..142
FT /note="PPR 2"
FT REPEAT 143..173
FT /note="PPR 3"
FT REPEAT 174..208
FT /note="PPR 4"
FT REPEAT 209..239
FT /note="PPR 5"
FT REPEAT 240..270
FT /note="PPR 6"
FT REPEAT 272..306
FT /note="PPR 7"
FT REPEAT 307..341
FT /note="PPR 8"
FT REPEAT 342..372
FT /note="PPR 9"
FT REGION 377..452
FT /note="Type E motif"
FT REGION 453..483
FT /note="Type E(+) motif"
FT REGION 484..581
FT /note="Type DYW motif"
SQ SEQUENCE 581 AA; 65453 MW; E00DF5CF496E53A9 CRC64;
MARVYMETMI QKCVSFSQIK QLQSHFLTAG HFQSSFLRSR LLERCAISPF GDLSFAVQIF
RYIPKPLTND WNAIIRGFAG SSHPSLAFSW YRSMLQQSSS SSAICRVDAL TCSFTLKACA
RALCSSAMDQ LHCQINRRGL SADSLLCTTL LDAYSKNGDL ISAYKLFDEM PVRDVASWNA
LIAGLVSGNR ASEAMELYKR METEGIRRSE VTVVAALGAC SHLGDVKEGE NIFHGYSNDN
VIVSNAAIDM YSKCGFVDKA YQVFEQFTGK KSVVTWNTMI TGFAVHGEAH RALEIFDKLE
DNGIKPDDVS YLAALTACRH AGLVEYGLSV FNNMACKGVE RNMKHYGCVV DLLSRAGRLR
EAHDIICSMS MIPDPVLWQS LLGASEIYSD VEMAEIASRE IKEMGVNNDG DFVLLSNVYA
AQGRWKDVGR VRDDMESKQV KKIPGLSYIE AKGTIHEFYN SDKSHEQWRE IYEKIDEIRF
KIREDGYVAQ TGLVLHDIGE EEKENALCYH SEKLAVAYGL MMMDGADEES PVRVINNLRI
CGDCHVVFKH ISKIYKREII VRDRVRFHRF KDGSCSCRDF W
