PPR73_ARATH
ID PPR73_ARATH Reviewed; 633 AA.
AC Q9LP03; F4IED8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g43980, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E58; OrderedLocusNames=At1g43980; ORFNames=F9C16.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC022314; AAF79685.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32010.2; -; Genomic_DNA.
DR PIR; G96503; G96503.
DR RefSeq; NP_175064.3; NM_103524.3.
DR AlphaFoldDB; Q9LP03; -.
DR SMR; Q9LP03; -.
DR PaxDb; Q9LP03; -.
DR PRIDE; Q9LP03; -.
DR EnsemblPlants; AT1G43980.1; AT1G43980.1; AT1G43980.
DR GeneID; 840997; -.
DR Gramene; AT1G43980.1; AT1G43980.1; AT1G43980.
DR KEGG; ath:AT1G43980; -.
DR Araport; AT1G43980; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_10_1; -.
DR InParanoid; Q9LP03; -.
DR OMA; LCIKMGF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LP03; -.
DR PRO; PR:Q9LP03; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LP03; baseline and differential.
DR Genevisible; Q9LP03; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..30
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 31..633
FT /note="Pentatricopeptide repeat-containing protein
FT At1g43980, mitochondrial"
FT /id="PRO_0000342814"
FT REPEAT 50..80
FT /note="PPR 1"
FT REPEAT 81..111
FT /note="PPR 2"
FT REPEAT 112..146
FT /note="PPR 3"
FT REPEAT 147..178
FT /note="PPR 4"
FT REPEAT 180..210
FT /note="PPR 5"
FT REPEAT 211..245
FT /note="PPR 6"
FT REPEAT 246..280
FT /note="PPR 7"
FT REPEAT 281..311
FT /note="PPR 8"
FT REPEAT 312..346
FT /note="PPR 9"
FT REPEAT 347..380
FT /note="PPR 10"
FT REPEAT 381..411
FT /note="PPR 11"
FT REPEAT 412..447
FT /note="PPR 12"
FT REPEAT 448..483
FT /note="PPR 13"
FT REPEAT 484..514
FT /note="PPR 14"
FT REGION 519..594
FT /note="Type E motif"
SQ SEQUENCE 633 AA; 71460 MW; AF40AC1F449B64B5 CRC64;
MFQLLRRAHG LCMPSSLYFS RLVNRSLLSK SPTLAKIVHA QLLEAGFVRT TYWGNRCLQL
YFKSGSVINA LQLFDDIPDK NTITWNVCLK GLFKNGYLNN ALDLFDEMPE RDVVSWNTMI
SGLVSCGFHE YGIRVFFDMQ RWEIRPTEFT FSILASLVTC VRHGEQIHGN AICSGVSRYN
LVVWNSVMDM YRRLGVFDYA LSVFLTMEDR DVVSWNCLIL SCSDSGNKEV ALDQFWLMRE
MEIQPDEYTV SMVVSICSDL RELSKGKQAL ALCIKMGFLS NSIVLGAGID MFSKCNRLDD
SVKLFRELEK WDSVLCNSMI GSYSWHCCGE DALRLFILAM TQSVRPDKFT FSSVLSSMNA
VMLDHGADVH SLVIKLGFDL DTAVATSLME MYFKTGSVDL AMGVFAKTDG KDLIFWNTVI
MGLARNSRAV ESLAIFNQLL MNQSLKPDRV TLMGILVACC YAGFVNEGIQ IFSSMEKAHG
VNPGNEHYAC IIELLCRVGM INEAKDIADK IPFEPSSHIW EPILCASLDL GDTRLAETVA
KTMLESEPKS SFPYLVLIKI YEMTWRWENS VKLRYAMNEH KLKSAQGSSK ISIESSVFSF
EADQLQIHGG HDTCALLDLL SWDSFDQKIH WSA
