PPR75_ARATH
ID PPR75_ARATH Reviewed; 596 AA.
AC Q9SX45; Q0WP29;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g50270;
GN Name=PCMP-E42; Synonyms=PCMP-E60; OrderedLocusNames=At1g50270;
GN ORFNames=F14I3.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007980; AAD50041.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32531.1; -; Genomic_DNA.
DR EMBL; AK229256; BAF01120.1; -; mRNA.
DR PIR; A96539; A96539.
DR RefSeq; NP_175445.1; NM_103911.2.
DR AlphaFoldDB; Q9SX45; -.
DR SMR; Q9SX45; -.
DR PaxDb; Q9SX45; -.
DR PRIDE; Q9SX45; -.
DR EnsemblPlants; AT1G50270.1; AT1G50270.1; AT1G50270.
DR GeneID; 841449; -.
DR Gramene; AT1G50270.1; AT1G50270.1; AT1G50270.
DR KEGG; ath:AT1G50270; -.
DR Araport; AT1G50270; -.
DR TAIR; locus:2011892; AT1G50270.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR OMA; STCKNWE; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SX45; -.
DR PRO; PR:Q9SX45; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SX45; baseline and differential.
DR Genevisible; Q9SX45; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..596
FT /note="Pentatricopeptide repeat-containing protein
FT At1g50270"
FT /id="PRO_0000342816"
FT REPEAT 66..102
FT /note="PPR 1"
FT REPEAT 103..136
FT /note="PPR 2"
FT REPEAT 137..167
FT /note="PPR 3"
FT REPEAT 168..202
FT /note="PPR 4"
FT REPEAT 203..237
FT /note="PPR 5"
FT REPEAT 239..269
FT /note="PPR 6"
FT REPEAT 270..304
FT /note="PPR 7"
FT REPEAT 305..339
FT /note="PPR 8"
FT REPEAT 340..370
FT /note="PPR 9"
FT REPEAT 371..405
FT /note="PPR 10"
FT REPEAT 406..436
FT /note="PPR 11"
FT REPEAT 442..472
FT /note="PPR 12"
FT REGION 477..552
FT /note="Type E motif"
FT REGION 553..584
FT /note="Type E(+) motif"
FT CONFLICT 441
FT /note="P -> L (in Ref. 3; BAF01120)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 596 AA; 67396 MW; E3AB2444B924EF28 CRC64;
MIELKTLLDL PLHFLHLKQI HCLLLTSPIF YTRRDLFLSR LLRRCCTAAT QFRYARRLLC
QLQTLSIQLW DSLIGHFSGG ITLNRRLSFL AYRHMRRNGV IPSRHTFPPL LKAVFKLRDS
NPFQFHAHIV KFGLDSDPFV RNSLISGYSS SGLFDFASRL FDGAEDKDVV TWTAMIDGFV
RNGSASEAMV YFVEMKKTGV AANEMTVVSV LKAAGKVEDV RFGRSVHGLY LETGRVKCDV
FIGSSLVDMY GKCSCYDDAQ KVFDEMPSRN VVTWTALIAG YVQSRCFDKG MLVFEEMLKS
DVAPNEKTLS SVLSACAHVG ALHRGRRVHC YMIKNSIEIN TTAGTTLIDL YVKCGCLEEA
ILVFERLHEK NVYTWTAMIN GFAAHGYARD AFDLFYTMLS SHVSPNEVTF MAVLSACAHG
GLVEEGRRLF LSMKGRFNME PKADHYACMV DLFGRKGLLE EAKALIERMP MEPTNVVWGA
LFGSCLLHKD YELGKYAASR VIKLQPSHSG RYTLLANLYS ESQNWDEVAR VRKQMKDQQV
VKSPGFSWIE VKGKLCEFIA FDDKKPLESD DLYKTLDTVG VQMRLPDELE DVTAES
