PPR76_ARATH
ID PPR76_ARATH Reviewed; 650 AA.
AC Q9ZU27;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g51965, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g51965; ORFNames=F5F19.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [4]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP TYR-23.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006216; AAD12672.1; -; Genomic_DNA.
DR EMBL; CP002684; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR PIR; B96559; B96559.
DR AlphaFoldDB; Q9ZU27; -.
DR SMR; Q9ZU27; -.
DR STRING; 3702.AT1G51965.1; -.
DR PaxDb; Q9ZU27; -.
DR PeptideAtlas; Q9ZU27; -.
DR PRIDE; Q9ZU27; -.
DR Araport; AT1G51965; -.
DR TAIR; locus:504956171; AT1G51965.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_8_1; -.
DR InParanoid; Q9ZU27; -.
DR PhylomeDB; Q9ZU27; -.
DR PRO; PR:Q9ZU27; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9ZU27; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; IMP:TAIR.
DR GO; GO:0008380; P:RNA splicing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..23
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 24..650
FT /note="Pentatricopeptide repeat-containing protein
FT At1g51965, mitochondrial"
FT /id="PRO_0000342817"
FT REPEAT 132..169
FT /note="PPR 1"
FT REPEAT 170..200
FT /note="PPR 2"
FT REPEAT 202..236
FT /note="PPR 3"
FT REPEAT 237..267
FT /note="PPR 4"
FT REPEAT 269..303
FT /note="PPR 5"
FT REPEAT 304..338
FT /note="PPR 6"
FT REPEAT 339..369
FT /note="PPR 7"
FT REPEAT 371..405
FT /note="PPR 8"
FT REPEAT 406..440
FT /note="PPR 9"
FT REPEAT 441..475
FT /note="PPR 10"
FT REPEAT 476..510
FT /note="PPR 11"
FT REPEAT 511..545
FT /note="PPR 12"
FT REPEAT 546..580
FT /note="PPR 13"
FT REPEAT 581..615
FT /note="PPR 14"
SQ SEQUENCE 650 AA; 73879 MW; 414213F6DF0EC7B6 CRC64;
MKLLRRRFFN SVNTITRPNR RHYATKYVAK VTSSSPSGRS LSAEVSLPNP LPADVRGYPL
PRRHLICRAT NLITGASNLS DAFSDLSDYL SSLSLSLTPD EASEILKSLN SPLLAVEFFK
LVPSLCPYSQ NDPFLYNRII LILSRSNLPD RFDRVRSILD SMVKSNVHGN ISTVNILIGF
FGNTEDLQMC LRLVKKWDLK MNSFTYKCLL QAYLRSRDYS KAFDVYCEIR RGGHKLDIFA
YNMLLDALAK DEKACQVFED MKKRHCRRDE YTYTIMIRTM GRIGKCDEAV GLFNEMITEG
LTLNVVGYNT LMQVLAKGKM VDKAIQVFSR MVETGCRPNE YTYSLLLNLL VAEGQLVRLD
GVVEISKRYM TQGIYSYLVR TLSKLGHVSE AHRLFCDMWS FPVKGERDSY MSMLESLCGA
GKTIEAIEML SKIHEKGVVT DTMMYNTVFS ALGKLKQISH IHDLFEKMKK DGPSPDIFTY
NILIASFGRV GEVDEAINIF EELERSDCKP DIISYNSLIN CLGKNGDVDE AHVRFKEMQE
KGLNPDVVTY STLMECFGKT ERVEMAYSLF EEMLVKGCQP NIVTYNILLD CLEKNGRTAE
AVDLYSKMKQ QGLTPDSITY TVLERLQSVS HGKSRIRRKN PITGWVVSPL
