PPR77_ARATH
ID PPR77_ARATH Reviewed; 819 AA.
AC Q9SSR4;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g52620;
GN OrderedLocusNames=At1g52620; ORFNames=F6D8.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC008016; AAD55603.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32830.1; -; Genomic_DNA.
DR PIR; A96567; A96567.
DR RefSeq; NP_175671.1; NM_104140.3.
DR AlphaFoldDB; Q9SSR4; -.
DR SMR; Q9SSR4; -.
DR STRING; 3702.AT1G52620.1; -.
DR iPTMnet; Q9SSR4; -.
DR PaxDb; Q9SSR4; -.
DR PRIDE; Q9SSR4; -.
DR ProteomicsDB; 236656; -.
DR EnsemblPlants; AT1G52620.1; AT1G52620.1; AT1G52620.
DR GeneID; 841694; -.
DR Gramene; AT1G52620.1; AT1G52620.1; AT1G52620.
DR KEGG; ath:AT1G52620; -.
DR Araport; AT1G52620; -.
DR TAIR; locus:2035124; AT1G52620.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9SSR4; -.
DR OMA; MHAYCKQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SSR4; -.
DR PRO; PR:Q9SSR4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SSR4; baseline and differential.
DR Genevisible; Q9SSR4; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:1990825; F:sequence-specific mRNA binding; IDA:TAIR.
DR GO; GO:0032981; P:mitochondrial respiratory chain complex I assembly; IMP:TAIR.
DR GO; GO:0000963; P:mitochondrial RNA processing; IMP:TAIR.
DR GO; GO:0008380; P:RNA splicing; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 7.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..819
FT /note="Pentatricopeptide repeat-containing protein
FT At1g52620"
FT /id="PRO_0000342818"
FT REPEAT 98..132
FT /note="PPR 1"
FT REPEAT 133..163
FT /note="PPR 2"
FT REPEAT 169..203
FT /note="PPR 3"
FT REPEAT 204..238
FT /note="PPR 4"
FT REPEAT 239..273
FT /note="PPR 5"
FT REPEAT 274..308
FT /note="PPR 6"
FT REPEAT 309..343
FT /note="PPR 7"
FT REPEAT 344..378
FT /note="PPR 8"
FT REPEAT 379..413
FT /note="PPR 9"
FT REPEAT 414..448
FT /note="PPR 10"
FT REPEAT 449..483
FT /note="PPR 11"
FT REPEAT 484..518
FT /note="PPR 12"
FT REPEAT 519..553
FT /note="PPR 13"
FT REPEAT 554..588
FT /note="PPR 14"
FT REPEAT 589..623
FT /note="PPR 15"
FT REPEAT 624..659
FT /note="PPR 16"
FT REPEAT 709..743
FT /note="PPR 17"
FT REPEAT 744..779
FT /note="PPR 18"
SQ SEQUENCE 819 AA; 92104 MW; 10F164356BA44089 CRC64;
MSKTLLSRIK PLSNPHASNS FRSHLPITPR IKKLVSDTVS ILKTQQNWSQ ILDDCFADEE
VRFVDISPFV FDRIQDVEIG VKLFDWLSSE KKDEFFSNGF ACSSFLKLLA RYRIFNEIED
VLGNLRNENV KLTHEALSHV LHAYAESGSL SKAVEIYDYV VELYDSVPDV IACNSLLSLL
VKSRRLGDAR KVYDEMCDRG DSVDNYSTCI LVKGMCNEGK VEVGRKLIEG RWGKGCIPNI
VFYNTIIGGY CKLGDIENAY LVFKELKLKG FMPTLETFGT MINGFCKEGD FVASDRLLSE
VKERGLRVSV WFLNNIIDAK YRHGYKVDPA ESIGWIIAND CKPDVATYNI LINRLCKEGK
KEVAVGFLDE ASKKGLIPNN LSYAPLIQAY CKSKEYDIAS KLLLQMAERG CKPDIVTYGI
LIHGLVVSGH MDDAVNMKVK LIDRGVSPDA AIYNMLMSGL CKTGRFLPAK LLFSEMLDRN
ILPDAYVYAT LIDGFIRSGD FDEARKVFSL SVEKGVKVDV VHHNAMIKGF CRSGMLDEAL
ACMNRMNEEH LVPDKFTYST IIDGYVKQQD MATAIKIFRY MEKNKCKPNV VTYTSLINGF
CCQGDFKMAE ETFKEMQLRD LVPNVVTYTT LIRSLAKESS TLEKAVYYWE LMMTNKCVPN
EVTFNCLLQG FVKKTSGKVL AEPDGSNHGQ SSLFSEFFHR MKSDGWSDHA AAYNSALVCL
CVHGMVKTAC MFQDKMVKKG FSPDPVSFAA ILHGFCVVGN SKQWRNMDFC NLGEKGLEVA
VRYSQVLEQH LPQPVICEAS TILHAMVEKA DTKEPVESP
