PPR78_ARATH
ID PPR78_ARATH Reviewed; 523 AA.
AC Q9SSR6;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g52640, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g52640; ORFNames=F6D8.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC008016; AAD55601.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32833.1; -; Genomic_DNA.
DR EMBL; AK221591; BAD95108.1; -; mRNA.
DR EMBL; BT012287; AAS76774.1; -; mRNA.
DR PIR; C96567; C96567.
DR RefSeq; NP_175673.1; NM_104142.3.
DR AlphaFoldDB; Q9SSR6; -.
DR SMR; Q9SSR6; -.
DR STRING; 3702.AT1G52640.1; -.
DR iPTMnet; Q9SSR6; -.
DR PaxDb; Q9SSR6; -.
DR PRIDE; Q9SSR6; -.
DR ProteomicsDB; 236657; -.
DR EnsemblPlants; AT1G52640.1; AT1G52640.1; AT1G52640.
DR GeneID; 841696; -.
DR Gramene; AT1G52640.1; AT1G52640.1; AT1G52640.
DR KEGG; ath:AT1G52640; -.
DR Araport; AT1G52640; -.
DR TAIR; locus:2035206; AT1G52640.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9SSR6; -.
DR OMA; LWAKRIP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SSR6; -.
DR PRO; PR:Q9SSR6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SSR6; baseline and differential.
DR Genevisible; Q9SSR6; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..5
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 6..523
FT /note="Pentatricopeptide repeat-containing protein
FT At1g52640, mitochondrial"
FT /id="PRO_0000342819"
FT REPEAT 101..135
FT /note="PPR 1"
FT REPEAT 137..171
FT /note="PPR 2"
FT REPEAT 172..206
FT /note="PPR 3"
FT REPEAT 207..241
FT /note="PPR 4"
FT REPEAT 242..276
FT /note="PPR 5"
FT REPEAT 277..311
FT /note="PPR 6"
FT REPEAT 312..346
FT /note="PPR 7"
FT REPEAT 347..381
FT /note="PPR 8"
FT REPEAT 382..416
FT /note="PPR 9"
FT REPEAT 417..452
FT /note="PPR 10"
FT REGION 498..523
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 523 AA; 60420 MW; 7BBA8FD2C904CBED CRC64;
MAIRTVSSLV RALYQTPKSQ SFRIFSTLLH DPPSPDLVNE ISRVLSDHRN PKDDLEHTLV
AYSPRVSSNL VEQVLKRCKN LGFPAHRFFL WARRIPDFAH SLESYHILVE ILGSSKQFAL
LWDFLIEARE YNYFEISSKV FWIVFRAYSR ANLPSEACRA FNRMVEFGIK PCVDDLDQLL
HSLCDKKHVN HAQEFFGKAK GFGIVPSAKT YSILVRGWAR IRDASGARKV FDEMLERNCV
VDLLAYNALL DALCKSGDVD GGYKMFQEMG NLGLKPDAYS FAIFIHAYCD AGDVHSAYKV
LDRMKRYDLV PNVYTFNHII KTLCKNEKVD DAYLLLDEMI QKGANPDTWT YNSIMAYHCD
HCEVNRATKL LSRMDRTKCL PDRHTYNMVL KLLIRIGRFD RATEIWEGMS ERKFYPTVAT
YTVMIHGLVR KKGKLEEACR YFEMMIDEGI PPYSTTVEML RNRLVGWGQM DVVDVLAGKM
ERSSSCSVQD MAVEMRGKRR RLGRRSENSE DDDDDFELER DTI
