PPR79_ARATH
ID PPR79_ARATH Reviewed; 471 AA.
AC Q9MAG8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g53330;
GN OrderedLocusNames=At1g53330; ORFNames=F12M16.23;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [4]
RP FUNCTION.
RX PubMed=17028967; DOI=10.1007/s10709-006-7518-x;
RA Kocabek T., Repkova J., Dudova M., Hoyerova K., Vrba L.;
RT "Isolation and characterization of a novel semi-lethal Arabidopsis thaliana
RT mutant of gene for pentatricopeptide (PPR) repeat-containing protein.";
RL Genetica 128:395-407(2006).
CC -!- FUNCTION: Involved during embryo development.
CC {ECO:0000269|PubMed:17028967}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC008007; AAF69537.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32926.1; -; Genomic_DNA.
DR PIR; E96573; E96573.
DR RefSeq; NP_175740.1; NM_104212.2.
DR AlphaFoldDB; Q9MAG8; -.
DR SMR; Q9MAG8; -.
DR STRING; 3702.AT1G53330.1; -.
DR PaxDb; Q9MAG8; -.
DR PRIDE; Q9MAG8; -.
DR EnsemblPlants; AT1G53330.1; AT1G53330.1; AT1G53330.
DR GeneID; 841768; -.
DR Gramene; AT1G53330.1; AT1G53330.1; AT1G53330.
DR KEGG; ath:AT1G53330; -.
DR Araport; AT1G53330; -.
DR TAIR; locus:2009620; AT1G53330.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9MAG8; -.
DR OMA; GRSKMFD; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9MAG8; -.
DR PRO; PR:Q9MAG8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9MAG8; baseline and differential.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
DR GO; GO:0010154; P:fruit development; IMP:TAIR.
DR GO; GO:0048364; P:root development; IMP:TAIR.
DR GO; GO:0048367; P:shoot system development; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 11.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..471
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g53330"
FT /id="PRO_0000342820"
FT REPEAT 46..81
FT /note="PPR 1"
FT REPEAT 82..116
FT /note="PPR 2"
FT REPEAT 117..147
FT /note="PPR 3"
FT REPEAT 151..185
FT /note="PPR 4"
FT REPEAT 186..221
FT /note="PPR 5"
FT REPEAT 222..256
FT /note="PPR 6"
FT REPEAT 257..291
FT /note="PPR 7"
FT REPEAT 292..326
FT /note="PPR 8"
FT REPEAT 327..361
FT /note="PPR 9"
FT REPEAT 362..396
FT /note="PPR 10"
SQ SEQUENCE 471 AA; 53074 MW; A4E54F98A0DF968B CRC64;
MSAVKSVSSF RLASLLRREN DPSAAMKLFR NPDPESTNPK RPFRYSLLCY DIIITKLGGS
KMFDELDQVL LHLKTDTRIV PTEIIFCNVI NFFGRGKLPS RALHMFDEMP QYRCQRTVKS
LNSLLSALLK CGELEKMKER LSSIDEFGKP DACTYNILIH GCSQSGCFDD ALKLFDEMVK
KKVKPTGVTF GTLIHGLCKD SRVKEALKMK HDMLKVYGVR PTVHIYASLI KALCQIGELS
FAFKLKDEAY EGKIKVDAAI YSTLISSLIK AGRSNEVSMI LEEMSEKGCK PDTVTYNVLI
NGFCVENDSE SANRVLDEMV EKGLKPDVIS YNMILGVFFR IKKWEEATYL FEDMPRRGCS
PDTLSYRIVF DGLCEGLQFE EAAVILDEML FKGYKPRRDR LEGFLQKLCE SGKLEILSKV
ISSLHRGIAG DADVWSVMIP TMCKEPVISD SIDLLLNTVK EDGPLSAMPQ C
