PPR7_ARATH
ID PPR7_ARATH Reviewed; 429 AA.
AC Q9LR72;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At1g03510;
GN Name=PCMP-E3; OrderedLocusNames=At1g03510; ORFNames=F21B7.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC002560; AAF86535.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27580.1; -; Genomic_DNA.
DR PIR; T00907; T00907.
DR RefSeq; NP_171850.1; NM_100233.2.
DR AlphaFoldDB; Q9LR72; -.
DR SMR; Q9LR72; -.
DR PaxDb; Q9LR72; -.
DR PRIDE; Q9LR72; -.
DR ProteomicsDB; 236586; -.
DR EnsemblPlants; AT1G03510.1; AT1G03510.1; AT1G03510.
DR GeneID; 839478; -.
DR Gramene; AT1G03510.1; AT1G03510.1; AT1G03510.
DR KEGG; ath:AT1G03510; -.
DR Araport; AT1G03510; -.
DR TAIR; locus:2020763; AT1G03510.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_0_1; -.
DR InParanoid; Q9LR72; -.
DR OMA; LFRHMEL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LR72; -.
DR PRO; PR:Q9LR72; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LR72; baseline and differential.
DR Genevisible; Q9LR72; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 10.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..429
FT /note="Putative pentatricopeptide repeat-containing protein
FT At1g03510"
FT /id="PRO_0000342748"
FT REPEAT 11..45
FT /note="PPR 1"
FT REPEAT 47..81
FT /note="PPR 2"
FT REPEAT 82..112
FT /note="PPR 3"
FT REPEAT 113..147
FT /note="PPR 4"
FT REPEAT 148..180
FT /note="PPR 5"
FT REPEAT 181..215
FT /note="PPR 6"
FT REPEAT 216..246
FT /note="PPR 7"
FT REPEAT 247..281
FT /note="PPR 8"
FT REPEAT 282..312
FT /note="PPR 9"
FT REPEAT 318..348
FT /note="PPR 10"
FT REGION 353..428
FT /note="Type E motif"
SQ SEQUENCE 429 AA; 47577 MW; 0332BB7B5322657E CRC64;
MSSSYASSCT KLISLTKQLS SYANQGNHEQ ALNLFLQMHS SFALPLDAHV FSLALKSCAA
AFRPVLGGSV HAHSVKSNFL SNPFVGCALL DMYGKCLSVS HARKLFDEIP QRNAVVWNAM
ISHYTHCGKV KEAVELYEAM DVMPNESSFN AIIKGLVGTE DGSYRAIEFY RKMIEFRFKP
NLITLLALVS ACSAIGAFRL IKEIHSYAFR NLIEPHPQLK SGLVEAYGRC GSIVYVQLVF
DSMEDRDVVA WSSLISAYAL HGDAESALKT FQEMELAKVT PDDIAFLNVL KACSHAGLAD
EALVYFKRMQ GDYGLRASKD HYSCLVDVLS RVGRFEEAYK VIQAMPEKPT AKTWGALLGA
CRNYGEIELA EIAARELLMV EPENPANYVL LGKIYMSVGR QEEAERLRLK MKESGVKVSP
GSSWCLFKD
