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PPR80_ARATH
ID   PPR80_ARATH             Reviewed;         717 AA.
AC   Q9C8L6; Q9LPH5;
DT   01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-JUL-2008, sequence version 2.
DT   25-MAY-2022, entry version 119.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At1g53600, mitochondrial;
DE   Flags: Precursor;
GN   Name=PCMP-E63; OrderedLocusNames=At1g53600; ORFNames=F22G10.27, T3F20.9;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA   Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA   Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA   Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA   Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA   Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA   Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA   Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA   Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA   Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA   Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA   Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA   Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA   Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL   Nature 408:816-820(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAF78430.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=AAG51982.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AC018748; AAF78430.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AC024260; AAG51982.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002684; AEE32968.1; -; Genomic_DNA.
DR   EMBL; CP002684; ANM58842.1; -; Genomic_DNA.
DR   PIR; B96576; B96576.
DR   RefSeq; NP_001321251.1; NM_001333599.1.
DR   RefSeq; NP_175765.2; NM_104238.3.
DR   AlphaFoldDB; Q9C8L6; -.
DR   SMR; Q9C8L6; -.
DR   STRING; 3702.AT1G53600.1; -.
DR   PaxDb; Q9C8L6; -.
DR   PRIDE; Q9C8L6; -.
DR   ProteomicsDB; 226467; -.
DR   EnsemblPlants; AT1G53600.1; AT1G53600.1; AT1G53600.
DR   EnsemblPlants; AT1G53600.2; AT1G53600.2; AT1G53600.
DR   GeneID; 841795; -.
DR   Gramene; AT1G53600.1; AT1G53600.1; AT1G53600.
DR   Gramene; AT1G53600.2; AT1G53600.2; AT1G53600.
DR   KEGG; ath:AT1G53600; -.
DR   Araport; AT1G53600; -.
DR   TAIR; locus:2024897; AT1G53600.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_30_4_1; -.
DR   InParanoid; Q9C8L6; -.
DR   OMA; FEACGRF; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9C8L6; -.
DR   PRO; PR:Q9C8L6; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   ExpressionAtlas; Q9C8L6; baseline and differential.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; -; 5.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 7.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 3.
DR   SUPFAM; SSF48452; SSF48452; 1.
DR   TIGRFAMs; TIGR00756; PPR; 9.
DR   PROSITE; PS51375; PPR; 16.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..47
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           48..717
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At1g53600, mitochondrial"
FT                   /id="PRO_0000342821"
FT   REPEAT          49..79
FT                   /note="PPR 1"
FT   REPEAT          80..110
FT                   /note="PPR 2"
FT   REPEAT          111..142
FT                   /note="PPR 3"
FT   REPEAT          143..173
FT                   /note="PPR 4"
FT   REPEAT          176..206
FT                   /note="PPR 5"
FT   REPEAT          207..241
FT                   /note="PPR 6"
FT   REPEAT          242..272
FT                   /note="PPR 7"
FT   REPEAT          274..308
FT                   /note="PPR 8"
FT   REPEAT          309..339
FT                   /note="PPR 9"
FT   REPEAT          340..374
FT                   /note="PPR 10"
FT   REPEAT          375..401
FT                   /note="PPR 11"
FT   REPEAT          402..436
FT                   /note="PPR 12"
FT   REPEAT          437..471
FT                   /note="PPR 13"
FT   REPEAT          472..502
FT                   /note="PPR 14"
FT   REPEAT          503..537
FT                   /note="PPR 15"
FT   REPEAT          538..568
FT                   /note="PPR 16"
FT   REPEAT          574..604
FT                   /note="PPR 17"
FT   REGION          609..684
FT                   /note="Type E motif"
FT   REGION          685..715
FT                   /note="Type E(+) motif"
SQ   SEQUENCE   717 AA;  80499 MW;  3B1F105DF62129FE CRC64;
     MVMRPISNKG LIYRHNICLR CNSTLAVSNH EPITQKTRNF LETTTTSTAI FQCNSQISKH
     ARNGNLQEAE AIFRQMSNRS IVSWIAMISA YAENGKMSKA WQVFDEMPVR VTTSYNAMIT
     AMIKNKCDLG KAYELFCDIP EKNAVSYATM ITGFVRAGRF DEAEFLYAET PVKFRDSVAS
     NVLLSGYLRA GKWNEAVRVF QGMAVKEVVS CSSMVHGYCK MGRIVDARSL FDRMTERNVI
     TWTAMIDGYF KAGFFEDGFG LFLRMRQEGD VKVNSNTLAV MFKACRDFVR YREGSQIHGL
     VSRMPLEFDL FLGNSLMSMY SKLGYMGEAK AVFGVMKNKD SVSWNSLITG LVQRKQISEA
     YELFEKMPGK DMVSWTDMIK GFSGKGEISK CVELFGMMPE KDNITWTAMI SAFVSNGYYE
     EALCWFHKML QKEVCPNSYT FSSVLSATAS LADLIEGLQI HGRVVKMNIV NDLSVQNSLV
     SMYCKCGNTN DAYKIFSCIS EPNIVSYNTM ISGYSYNGFG KKALKLFSML ESSGKEPNGV
     TFLALLSACV HVGYVDLGWK YFKSMKSSYN IEPGPDHYAC MVDLLGRSGL LDDASNLIST
     MPCKPHSGVW GSLLSASKTH LRVDLAELAA KKLIELEPDS ATPYVVLSQL YSIIGKNRDC
     DRIMNIKKSK RIKKDPGSSW IILKGEVHNF LAGDESQLNL EEIGFTLKMI RKEMELI
 
 
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