PPR81_ARATH
ID PPR81_ARATH Reviewed; 477 AA.
AC Q7X6A5; Q9LG03;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g55630;
GN OrderedLocusNames=At1g55630; ORFNames=F20N2.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79508.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC002328; AAF79508.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE33276.1; -; Genomic_DNA.
DR EMBL; BT008546; AAP40373.1; -; mRNA.
DR EMBL; BT008642; AAP40457.1; -; mRNA.
DR EMBL; AK229723; BAF01561.1; -; mRNA.
DR PIR; G96598; G96598.
DR RefSeq; NP_175959.1; NM_104439.4.
DR AlphaFoldDB; Q7X6A5; -.
DR SMR; Q7X6A5; -.
DR PaxDb; Q7X6A5; -.
DR PRIDE; Q7X6A5; -.
DR ProteomicsDB; 226371; -.
DR EnsemblPlants; AT1G55630.1; AT1G55630.1; AT1G55630.
DR GeneID; 842012; -.
DR Gramene; AT1G55630.1; AT1G55630.1; AT1G55630.
DR KEGG; ath:AT1G55630; -.
DR Araport; AT1G55630; -.
DR TAIR; locus:2020527; AT1G55630.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_25_1; -.
DR InParanoid; Q7X6A5; -.
DR OMA; TYNILMC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q7X6A5; -.
DR PRO; PR:Q7X6A5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q7X6A5; baseline and differential.
DR Genevisible; Q7X6A5; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 3.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..477
FT /note="Pentatricopeptide repeat-containing protein
FT At1g55630"
FT /id="PRO_0000342822"
FT REPEAT 151..185
FT /note="PPR 1"
FT REPEAT 186..220
FT /note="PPR 2"
FT REPEAT 221..255
FT /note="PPR 3"
FT REPEAT 256..290
FT /note="PPR 4"
FT REPEAT 291..325
FT /note="PPR 5"
FT REPEAT 326..360
FT /note="PPR 6"
FT REPEAT 361..395
FT /note="PPR 7"
FT REPEAT 396..430
FT /note="PPR 8"
FT REPEAT 431..465
FT /note="PPR 9"
SQ SEQUENCE 477 AA; 54183 MW; DF3CBE949626F3C5 CRC64;
MNSVIHYSTS VAVRKASRFL FTSRKFCNGS IGGDVTDNGT EEPLKITWES SEMDCEFDQE
ENGEKISVRK RFMESTKLSA SRVLDTLQQD CPGFNTKSAL DELNVSISGL LVREVLVGIL
RTLSFDNKTR CAKLAYKFFV WCGGQENFRH TANCYHLLMK IFAECGEYKA MCRLIDEMIK
DGYPTTACTF NLLICTCGEA GLARDVVEQF IKSKTFNYRP YKHSYNAILH SLLGVKQYKL
IDWVYEQMLE DGFTPDVLTY NIVMFANFRL GKTDRLYRLL DEMVKDGFSP DLYTYNILLH
HLATGNKPLA ALNLLNHMRE VGVEPGVIHF TTLIDGLSRA GKLEACKYFM DETVKVGCTP
DVVCYTVMIT GYISGGELEK AEEMFKEMTE KGQLPNVFTY NSMIRGFCMA GKFKEACALL
KEMESRGCNP NFVVYSTLVN NLKNAGKVLE AHEVVKDMVE KGHYVHLISK LKKYRRS
